Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a14
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   1.9  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   2.6  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   2.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   4.5  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   7.8  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 199 PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 68
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 60  IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 173
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = -1

Query: 267 LNFFFSL--TRDKQGILEKIKSVCV-----RSDARLEFTGYKKLNETIREIVLYYDNTIH 109
           +N F++L  TRDK+GI+E I+   +     R   R       +  E I EI  +  N++ 
Sbjct: 139 VNIFWTLLKTRDKEGIVETIEGQPIAFKVARRIFRRLLVYTSEAGENI-EICFFLTNSLF 197

Query: 108 YRLLTN 91
            RLL N
Sbjct: 198 KRLLNN 203


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 151 NNTRNSSILRQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALW 8
           N+ R S  L   D   I+ KL+  K ND  I+ + I  +  D    LW
Sbjct: 525 NSERISHTLELQD---ILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 129 YYDNTIHYRLLTN 91
           YYDNTI +R++ N
Sbjct: 490 YYDNTIFHRIIKN 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,804
Number of Sequences: 5004
Number of extensions: 24893
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)