Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a14
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    38   0.004
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    36   0.012
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    33   0.065
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    28   3.2  
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353...    28   3.2  
09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999...    27   4.3  
10_07_0192 + 13953721-13954128                                         26   9.9  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = -1

Query: 243 RDKQGILEKIKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTIH 109
           RDK G LEK+ +   R DA + F G K + E++++ +LYYDN ++
Sbjct: 110 RDK-GALEKVFA-STRFDAVVHFAGLKAVGESVQKPLLYYDNNVN 152


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = -1

Query: 243 RDKQGILEKIKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 112
           RDK G LEK+ S   R DA + F G K + E++++ +LYYD+ +
Sbjct: 80  RDKGG-LEKVFS-STRFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 33.5 bits (73), Expect = 0.065
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = -1

Query: 243 RDKQGILEKIKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 112
           RDKQ  L++I S   R +A + F G K + E++++ +LYYDN +
Sbjct: 69  RDKQA-LDQIFS-SQRFEAVIHFAGLKAVGESVQKPLLYYDNNL 110


>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 220 KNKKCVCPLRRTTGVYW 170
           KN+ C  PLRR  GV W
Sbjct: 169 KNRPCAVPLRRDDGVQW 185


>02_02_0592 -
           11934238-11934249,11934755-11934835,11935166-11935324,
           11936362-11936442,11936523-11936591,11937147-11937260,
           11937805-11937858,11938788-11938915,11940527-11940782
          Length = 317

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 163 KIKRNNTRNSSIL---RQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALWR 5
           K K NN   +S L    +HD   ++NK    K +  + Y  + ++   D+ + LWR
Sbjct: 97  KSKANNLEENSNLIGTMEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWR 152


>09_06_0023 -
           20299435-20299528,20299666-20299757,20299873-20299955,
           20300066-20300147,20300235-20300462,20300646-20300747,
           20300834-20300969,20301105-20301514
          Length = 408

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 198 RSDARLEFTGYKKLNETIREIVLYYDNTI 112
           R DA + F G K + E++    +YY+N +
Sbjct: 137 RYDAVIHFAGLKAVGESVAHPQMYYENNV 165


>10_07_0192 + 13953721-13954128
          Length = 135

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +3

Query: 33  VSLIIVFSYIC*SFVL---CLVNLLIICSVSCCRNIELFLVLFRLIFYIQ*TPVVRRSGH 203
           V ++ V + IC S      C  +  ++ + SC       L +    FY+   PV+RR   
Sbjct: 20  VVVLAVLTLICGSTTSPLPCAGSAAVVAAASCVLAARRMLAVLSPWFYVGGGPVIRRGHE 79

Query: 204 THFLFFLIFLAC 239
               F++   AC
Sbjct: 80  WSPPFYMYARAC 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,641
Number of Sequences: 37544
Number of extensions: 117016
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)