Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a14
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.00 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.00 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   9.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   9.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   9.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.00
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 108 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSG 200
           +V  C  I   + +  L+F+ + TPVVR SG
Sbjct: 520 AVISCLGIVATMAVACLLFHHRDTPVVRASG 550


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.00
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 108 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSG 200
           +V  C  I   + +  L+F+ + TPVVR SG
Sbjct: 610 AVISCLGIVATMAVACLLFHHRDTPVVRASG 640


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 96  LIICSVSCCRNIELFLVLFRLIFYI---Q*TPVVRRSGHTHFLFFLIF 230
           LI+C+V+ C ++   +V+F ++ ++   Q  PV   +     L FL++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 CSVSCCRNIELFLVLFRLIFYI 170
           C +SC  NI   ++L   +FY+
Sbjct: 158 CVLSCWTNIYYIIILAWALFYL 179


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 CSVSCCRNIELFLVLFRLIFYI 170
           C +SC  NI   ++L   +FY+
Sbjct: 105 CVLSCWTNIYYIIILAWALFYL 126



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +3

Query: 96  LIICSVSCCRNIELFLVLFRLIFYI 170
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVVGFM 340


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 54  SYIC*SFVLCLVNLLIICSVSCCR 125
           S++    +LC  ++L +C++S  R
Sbjct: 113 SWVSLDILLCTASILSLCAISIDR 136


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 129 YYDNTIHYRLLTN*RDTKQTTNKYMK 52
           Y  N IHY  + N  DT+ +     K
Sbjct: 288 YQQNDIHYEGVQNILDTQSSAKVVSK 313


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 129 YYDNTIHYRLLTN*RDTKQTTNKYMK 52
           Y  N IHY  + N  DT+ +     K
Sbjct: 288 YQQNDIHYEGVQNILDTQSSAKVVSK 313


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 129 YYDNTIHYRLLTN*RDTKQTTNKYMK 52
           Y  N IHY  + N  DT+ +     K
Sbjct: 288 YQQNDIHYEGVQNILDTQSSAKVVSK 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,279
Number of Sequences: 438
Number of extensions: 1864
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)