Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a12
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    29   0.73 
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    26   6.8  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.8  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   9.0  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 703 QRYNVFGSSHNFFPSVLRLLRHMYISLYLTS 611
           +RY +     N  PS+LRLLR  Y+ L L S
Sbjct: 282 ERYQIEIVQSNALPSLLRLLRSSYLPLILAS 312


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 702 NAIMFLVLLTIFSPVFYAYFGTCIFHYI 619
           NA +  ++  I +PVFY+     +FH+I
Sbjct: 70  NAFLGQIIALIIAPVFYSAQAYVLFHHI 97


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 725 MPHEFPNPTL*CFWFFSQFFPQCSTLTSAHVYFTISNILFAVKGGRVLFRVACPLICAHI 546
           +P  +P PT     F    FPQ   LTS+ ++F ++  +       +L  ++C LI   +
Sbjct: 74  IPASYPIPTF-KETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGV 132

Query: 545 ACIM-LW 528
             I+ +W
Sbjct: 133 LIIINVW 139


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 TLKESELSPDSIVIGVSELWEGVVSFRPSVTDDELSHYEAM 334
           TL+  E SP S    VS+  + +++  P+V DDE  H E +
Sbjct: 45  TLRSQE-SPCSTTFPVSDRKDALLNI-PTVVDDEFQHTEEL 83


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 616 TSCLP*KEDGYCFEWRVL*FVPILLASCFGLALALSRLLRHP 491
           TSC+   +     +   +  +PI  AS  G+ + + RLLRHP
Sbjct: 23  TSCVRLAKHAKTGDLAAIKIIPIRYAS-IGMEILMMRLLRHP 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,501
Number of Sequences: 5004
Number of extensions: 64092
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)