Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a12
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    44   2e-04
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090...    29   4.1  
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    29   4.1  

>04_04_1163 - 31398565-31398654,31398729-31398812,31398893-31399037,
            31399118-31399239,31399338-31399376,31399491-31399601,
            31399682-31399804,31399946-31400032,31400136-31400207,
            31400349-31400621,31400704-31400895,31400988-31401171,
            31401339-31401480,31401578-31401821,31401959-31402603,
            31403024-31403293
          Length = 940

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 43/93 (46%)
 Frame = +2

Query: 68   RYKLRPEVNLEAVAEALPDKCTGADLLQXXXXXXXXXXXXXXXKLHNGTLKESELSPDSI 247
            +YKL   V+L ++A+  P   TGAD+                  L     + SE S D +
Sbjct: 843  KYKLHENVSLLSIAQQCPPNFTGADIYALCADAWYHAAKNLAKTLEADPSRTSEASADDV 902

Query: 248  VIGVSELWEGVVSFRPSVTDDELSHYEAMESQM 346
            ++ +++    +    PS++ +EL +YE +  ++
Sbjct: 903  IVEINDFMTVLGDITPSLSIEELQNYEQLRKKI 935


>01_07_0106 -
           41107673-41107942,41108362-41108574,41108877-41109041,
           41109431-41109649,41110205-41110324,41110427-41110489,
           41111034-41111606,41111691-41111858,41112414-41112495,
           41112667-41112743,41113031-41113101,41114315-41114363
          Length = 689

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 444 NKDNAQ*ENKNAKIKQNTYI-NNKTSRLENCLF 349
           NK N     KN  +  +TY+  N T RLENC+F
Sbjct: 31  NKSNEYVAFKNYIVMLDTYLYGNLTRRLENCIF 63


>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 649 SVEHWGKNCEKNQKHYSVGLGNSC 720
           S EHW ++CE   K  ++G  N C
Sbjct: 175 SCEHWHRDCEVGVKDITLGASNPC 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,020,993
Number of Sequences: 37544
Number of extensions: 412891
Number of successful extensions: 789
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)