Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5a12
(767 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.59
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 3.1
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 4.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 4.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 4.1
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 23 4.1
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 4.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 4.1
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.5
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 22 7.2
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.4 bits (53), Expect = 0.59
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 362 SSLLVLLLIYVFCFIFAFLFSYWALS 439
S +LVLL+I V F+F WA S
Sbjct: 1003 SGVLVLLVIIVLAFVFRESVGAWAYS 1028
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDGNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 531 KHDASNMGTNQRTRHSKQYPSSFYGKQDVRYSEIYMCRSK 650
+H+ N N R + S Y K+D RY +++ K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 5.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 328 SDGVTNVK*TVF*STGLVINICILFYFCVF 417
SDG+ N+ + G + + I+ YFC++
Sbjct: 196 SDGIENIGSIRWELAGTLAVVWIMCYFCIW 225
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 5.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 328 SDGVTNVK*TVF*STGLVINICILFYFCVF 417
SDG+ N+ + G + + I+ YFC++
Sbjct: 249 SDGIENIGSIRWELAGTLAVVWIMCYFCIW 278
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/25 (36%), Positives = 9/25 (36%)
Frame = -3
Query: 555 CPYCXXXXXXXXXXXXAFYDTHELS 481
CPYC F D HE S
Sbjct: 8 CPYCRRNFSCYYSLKRHFQDKHEQS 32
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,486
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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