Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a11
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   3.5  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    24   6.1  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 121 RSKQRLIFKSIKVFTSAFX*NWYEWFC*SFXVLSLERF 8
           R + +L+     +FTSAF  NW + F     +LSL  F
Sbjct: 91  RRESKLVSHVCSLFTSAFVFNWPKHF--DIPLLSLPSF 126


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 302 YTKHHYCT*HLMVVIDDTRVDM 237
           + KH +C   + ++ DD  VDM
Sbjct: 356 FVKHPFCNRSIPIICDDIIVDM 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,563
Number of Sequences: 5004
Number of extensions: 9979
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)