Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a11
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   6.0  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   6.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 285 LHLTPDGCHRRHPRR 241
           LH   D C R +PRR
Sbjct: 713 LHYETDPCVRYYPRR 727


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 243 RYVSEFNISSCST 205
           RYV E N+++C T
Sbjct: 192 RYVPEGNMTACGT 204


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 109 RLIFKSIKVFTSAFX*NWYE 50
           RLI +S  V  +A+  +WY+
Sbjct: 179 RLIEESSSVMEAAYSCHWYD 198


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 243 RYVSEFNISSCST 205
           RYV E N+++C T
Sbjct: 68  RYVPEGNMTACGT 80


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 273 PDGCHRRHPRRYVSEF 226
           P+GC RR  R+  + F
Sbjct: 3   PNGCPRRRGRQTYTRF 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,166
Number of Sequences: 438
Number of extensions: 700
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)