Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a08
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    29   0.052
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.48 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.48 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   4.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.8  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 375 KNNRKPNYCEMDWHNYHRLHVIYAFMENLSHEYPYLC 485
           ++N+KPN C +   +Y R   +   +   S E PY C
Sbjct: 244 EDNQKPNVCRICGKSYARPSTLKTHLRTHSGEKPYRC 280


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 376 FEYLIPCSLLSTDPTSPIAIEYGISLS*SIPAICVILGPSTIISIVLFSSF 224
           F + I C ++       I+  Y IS      ++ + +GP  +I  +LF  F
Sbjct: 524 FRFYIACGIMILVANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGF 574


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 376 FEYLIPCSLLSTDPTSPIAIEYGISLS*SIPAICVILGPSTIISIVLFSSF 224
           F + I C ++       I+  Y IS      ++ + +GP  +I  +LF  F
Sbjct: 524 FRFYIACGIMILVANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGF 574


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 534 LKVSNGNEYNVGVWLDAAIHPREWISTAVVTYIADRLVRTFHE 662
           + V    +  V + LDA +   + I+       AD L+R FHE
Sbjct: 345 MTVGKKKDGTVRICLDARMINSKMIADCESPPAADELLRRFHE 387


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 701 KYVPILISYTIRLLMKGPDE-SISNVRHDSCADPLT 597
           K+    ++ T   L   P E S+++V  + CA PLT
Sbjct: 243 KFTEQSVTSTFDFLSLHPAETSMNDVNRNDCAKPLT 278


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 284 GYLCDSRSIHHYIHCAIFFFPDCYRSMC 201
           GY+CD  S  +  +C I    +C  + C
Sbjct: 398 GYICDCPSGTNGTNCEIDTINECDSNPC 425


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,300
Number of Sequences: 336
Number of extensions: 4022
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)