Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a04
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...   132   4e-32
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    31   0.23 
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   4.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   8.5  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   8.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.5  
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.5  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score =  132 bits (320), Expect = 4e-32
 Identities = 69/170 (40%), Positives = 98/170 (57%)
 Frame = +1

Query: 226 VRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNSGDPYHAYYQHKVREIKEGKVPE 405
           +R I+DK+AS+VARNGP FE +IRQNE  N KF FL++ DPYH YYQHK+ E +EGK+  
Sbjct: 41  IREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAREGKLKS 100

Query: 406 PTAPPTMPSGQQRMGLAPATAARQQELLKXXXXXXXXXXXXXXXDFEFIADPPSISALEL 585
                           A   + ++   L                 + F    PSIS+L+L
Sbjct: 101 H---------------ATGLSTQKTSTLARPIQKPIEATIPAPSPYLFSEPLPSISSLDL 145

Query: 586 DIVKLTAQFVARNGRQFLTDLMKKEERNHQFDFLRPQHSLFQYFTRLLEQ 735
           D+++LTA++ A  G  FL  L +KE  N QFDFL+P ++L+ YF R+++Q
Sbjct: 146 DVLRLTARYAAVRGSSFLVSLSQKEWNNTQFDFLKPNNALYPYFMRIVQQ 195


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 234 ISDFRWWINNANDWRGWWRRIFRDL 160
           IS F+W  NN NDW    +  FRD+
Sbjct: 189 ISKFKWDSNNNNDWSSLMKDCFRDV 213


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 633 LTTVSGDKLRG*FHYVELQSRYRRWISDKFE 541
           L +V+ + L+  F  +E     R+W+ DKFE
Sbjct: 95  LKSVNEENLKKFFSELENHGNIRQWLKDKFE 125


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 435  TATNGSRSSHSGPPAGAPQGSCSCRTASAARPTTRFRI-YR*STVYIGSG 581
            T T  + SS S PPA AP+ + +  T++  + T    +  +   VY+G G
Sbjct: 1289 TTTQEASSSASVPPAIAPESANAALTSTIDKTTGAPELAQKKYKVYVGQG 1338


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 307 LGNPKFNFLNSGDPYHAYYQHKV 375
           L    FN+ NS DP H +Y+ ++
Sbjct: 119 LSQTLFNYANSKDPLHIWYKARL 141


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 314  IQSSTSLIQGIPTMLTISIKSERSKREK--FPNQLHHQLCHQDSNEWV 451
            I +  S++  IP   +++ KSE +K ++  +   LHH L     N+W+
Sbjct: 1164 IDADESVLHDIPAYESLN-KSESNKYQEQAYSTPLHHTLNVLPKNKWI 1210


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 432 RTATNGSRSSHSGPPAGAPQGSCSC 506
           R A N   +     PA  P GSCSC
Sbjct: 187 RGAVNRGVNLSEARPAAQPSGSCSC 211


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 459 SHSGPPAGAPQGSCSCRTASAARPTTRFRIYR*STVYIGS 578
           SH G  A AP  S     A + RP   +R  +  TVY  S
Sbjct: 366 SHGGTSAAAPLASAVYALALSIRPDLSWRDIQHITVYSAS 405


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +1

Query: 304 ELGNPKFNFLNSGDPYHAY 360
           ++G+ KF++LN+ +PY A+
Sbjct: 168 DIGSSKFSYLNAKNPYPAW 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,508
Number of Sequences: 5004
Number of extensions: 51376
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)