Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5a03
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.72 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    27   2.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   6.7  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.9  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   8.9  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 621 WANAALWPEPSVWAVYPLWSVLLTRW 698
           W +   +P PS W   P ++++L +W
Sbjct: 50  WNSHEYFPSPSNWRALPFYTIILDKW 75


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 682 TLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETDRVHKAHS 533
           T+    T+HTE S  +A    +T T +++ +              HK+HS
Sbjct: 739 TIVEATTSHTESSNSKAPAIEETTTTKVEVVAAHDAVSISSNSSTHKSHS 788


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 517 TGMVHSTGNISACKARMVQNTVRTVHMGR-YKDRKAHMGHSWAR 389
           T  +H  G+   CK  +V+N    +   R  + R AH+G+   R
Sbjct: 91  TRSLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR 134


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +3

Query: 531 ILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANAALWPEPSVWAV 665
           +L   WT    M T  P  P+       V W+     P  S W V
Sbjct: 119 VLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSPWGV 163


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = -3

Query: 697 HLVSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMG----RRGRTVRIETDRVHKAHSM 530
           H+ S + HR  + +      +++L  +    + K +     R GR+ +   D++ +    
Sbjct: 110 HVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPLDQIDRLDVT 169

Query: 529 ACKTTGMVHSTGNISACKARMVQNT 455
               +G  H  G   AC+    +N+
Sbjct: 170 GLYGSGSFHHDGPFDACRPHRNRNS 194


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 449 ADRVLDHARLACRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVLHLVRASLVGQ 628
           A +V+D A      +PR V  +       VG+ DP R ++  A    H   +    L G 
Sbjct: 564 ATKVIDKAD-NWETLPRDVAESSLEFVSLVGIYDPPRTESKGAVELCHRAGIRVHMLTGD 622

Query: 629 CRPVARAL--RMGSVPP 673
               A+A+   +G +PP
Sbjct: 623 HPETAKAIAREVGIIPP 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,840
Number of Sequences: 5004
Number of extensions: 38703
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)