Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p22
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    29   0.68 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   1.2  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.6  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   8.3  

>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 363 VTPIKFFVKPV-TREPEIIKAILPQSHMFEWREHFW 259
           +TP  F+ K + TR P IIK+ LP+S   +W+ + W
Sbjct: 27  LTPKDFYDKFIATRTPVIIKSSLPES---DWKGYLW 59


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 636 LVSFIQCFVLVLCICGYCLYIIWFG 710
           L+S I C VLVLC+ GY  ++++ G
Sbjct: 256 LISLI-CSVLVLCLLGYEFFLVYAG 279


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/86 (22%), Positives = 38/86 (44%)
 Frame = -1

Query: 553 MNRTQRSIHNEAQSSMANEQ*HMPIKPGLQMTTSAQLSRKTAQPLTIQATANA*LHNILG 374
           +N +     N+A     +++ H P  P   ++T +Q  ++  +PLTIQ   +      + 
Sbjct: 23  VNGSDSGTGNDAYKLETDDE-HPPATPVRGLSTRSQ--KRPFRPLTIQQDEDVENDTGMN 79

Query: 373 CRYSDTHQIFCQTGNQGT*NYQSNTP 296
             Y+D +     T    T   ++N+P
Sbjct: 80  TEYNDDNSSLVNTPRDSTTYAETNSP 105


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 550 SFIMVAVSSAFLFLAVAIFGGNCYRRDWLLYPSFNVLSWSYAFAVIAFIL 699
           S IMV    A L +    F  NC     ++Y   N+L   Y  A   F L
Sbjct: 166 SLIMVLFQPALLLIDHGHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCL 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,614
Number of Sequences: 5004
Number of extensions: 74148
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)