Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p22
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0148 - 1337494-1338057                                           33   0.17 
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   5.0  
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    29   5.0  
01_01_0155 - 1362710-1363267                                           28   6.6  
04_01_0213 - 2692253-2694562                                           28   8.7  
03_06_0388 + 33564096-33564485,33564642-33564812,33565125-335651...    28   8.7  
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865...    28   8.7  

>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 447 CADVVICSPGFIGMCHCSLAIEDCAS 524
           C D+ +C+     +CHCS  +E CA+
Sbjct: 125 CCDIAVCTKSLPPICHCSDEVESCAA 150


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 217  LLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDNFRFPGYRF 339
            L + F G   +E +P+ F+PF H G    C     FPG  F
Sbjct: 1526 LRIKFVGRRILEQFPDQFTPFLHFG----CNLQQPFPGTLF 1562


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +1

Query: 511 KTVLRYEWIFVFYSF-----IMVAVSSAFLFLAVAIFGGNCYRRDWLLYPSFNVLSWSYA 675
           ++  RY W F+FY F     I  A+S +  F+  ++ G         ++ + NV+ ++ A
Sbjct: 183 ESAFRYGWFFLFYFFHISFCIYAAISPSIFFVGRSLTG---------IFQAINVIGYNGA 233

Query: 676 FAVIAFILFGL 708
             ++ F+ F +
Sbjct: 234 VGILFFLGFAM 244


>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 447 CADVVICSPGFIGMCHCSLAIEDCAS 524
           C D+ ICS     +C C+  +E CA+
Sbjct: 120 CCDMDICSRSLPPICRCADEVESCAA 145


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
 Frame = +1

Query: 406 LPGWLMAVQFF-----VTVALMLSFAAQVLL 483
           +PGW++ +Q F     + +A++ SF AQ+LL
Sbjct: 1   MPGWMIGLQLFWNAWMIRLAILSSFVAQLLL 31


>03_06_0388 +
           33564096-33564485,33564642-33564812,33565125-33565145,
           33565260-33565467,33566156-33566346,33566465-33566584,
           33566703-33566936
          Length = 444

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 221 SFHL---LVLTGWNHIQKCSLHSNIWDCGSIALIISGSLVTGLTKNLMGVTISTAKNIMQ 391
           SFH    L + G   +    +H ++ DC  + L        G + N  G+ I+ +KN+  
Sbjct: 197 SFHTCDNLSVNGLKMVNSQQIHMSVEDCTGVELAHLSISAPGTSPNTDGIHITHSKNVQV 256

Query: 392 S 394
           S
Sbjct: 257 S 257


>02_02_0642 +
           12585531-12586126,12586292-12586371,12586481-12586539,
           12587190-12587462,12587876-12587914,12588086-12588231,
           12589495-12589696
          Length = 464

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 180 HWSQ--YHLCGGFISPPFICWSLLDGIISRNVLSIQTYGIVGVLL 308
           HW     H+C   I  P + W   DG I+  V    ++ I+G ++
Sbjct: 285 HWGSGCSHVCKSHIYHPILPWLNSDGSINSTVYECLSHRIIGYVM 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,514,336
Number of Sequences: 37544
Number of extensions: 459219
Number of successful extensions: 1051
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)