Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p22
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.73 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   5.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 476 TWAANDNISATVTKNCTAINHPGNSQCLI 390
           T + N N++   T N  AIN PG++  ++
Sbjct: 532 TSSVNSNLTVNQTVNPVAINIPGDTSIIV 560


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 597 GNIRWELLQT*LALVSFIQCFVLV 668
           GNIRWEL  T   L+ +I C+  +
Sbjct: 170 GNIRWELAGT--LLLVWILCYFCI 191


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 412 GWLMAVQF--FVTVALMLSFAAQVLLAC 489
           GWL+ + +  F T+ L LSF   V+LAC
Sbjct: 134 GWLLLMLYLLFATLPLRLSFC--VVLAC 159


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 180 HWSQYHLCGGFISPPFICWSLLDGIISRNVLS 275
           H  +YHL   F S PF C       +++++L+
Sbjct: 2   HHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLN 33


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 580 FLFLAVAIFGGNC 618
           +LFLAV I GG C
Sbjct: 407 YLFLAVGIVGGAC 419


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 597 HSKKEESTRNCYHNE*IEHKDPFITKHS 514
           HS K ++  N  HN+   H      +H+
Sbjct: 434 HSSKSDNQNNNQHNDQAHHSSKSNNRHN 461


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 180 HWSQYHLC 203
           +WS YHLC
Sbjct: 39  YWSMYHLC 46


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 200 MWGLYFSSFHLLVLTGWNHIQKCSLHSNIWDC---GSIALIIS--GSLVTGLTKNLM 355
           M+GLY SSF +LV    +          +WD    G I L  +  GS+V  L + ++
Sbjct: 119 MFGLYLSSF-VLVCISMDRYYAVIKPLQLWDVDKRGKIMLSFAWIGSVVCSLPQTIV 174


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 613 NCYRRDWLLYPSF 651
           NCY   W+L P F
Sbjct: 112 NCYYETWVLGPLF 124


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 300 LPQSHMFEWREHFWI*FHPVRT 235
           LP    F+W++ F+  ++P  T
Sbjct: 279 LPHLEEFDWQKPFYPGYYPTMT 300


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -2

Query: 354 IKFFVKPVTREPEIIKAILPQSHMF 280
           + +F++P+     ++ ++L  SHM+
Sbjct: 452 LSYFIEPIYFHSIVLGSLLNPSHMY 476


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 421 MAVQFFVTVALMLSFAAQVLLACVIVRWPLKTVLR-YEWIFVFYSFIMVAVSSAFLFLAV 597
           MA+ + VT + M  FAA  LL    V +    V      + VF + ++  VS   + + +
Sbjct: 138 MAIPYAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLVGM 197

Query: 598 AIF 606
            ++
Sbjct: 198 VMY 200


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 613 NCYRRDWLLYPSF 651
           NCY   W+L P F
Sbjct: 78  NCYYETWVLGPLF 90


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 617 QFPPNIATARKRKALETATIM 555
           QFP N+AT     +++ +T++
Sbjct: 728 QFPTNVATTVTSMSIDQSTVI 748


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 605 SVGTATDVTGSCILHSMFCLGP 670
           S GT T  TG+ +LH +    P
Sbjct: 178 STGTTTTSTGTRLLHGILSQHP 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,223
Number of Sequences: 438
Number of extensions: 5247
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)