Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p20
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215...    31   1.3  
01_07_0229 + 42161770-42164562                                         30   2.2  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    28   8.8  
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    28   8.8  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   8.8  

>04_04_1658 -
           35119623-35119754,35121033-35121121,35121205-35121599,
           35122009-35122091,35122163-35124184,35124859-35124927,
           35125050-35125130,35125215-35125308,35125435-35125499,
           35125961-35126038,35126115-35126360
          Length = 1117

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 477 YLCSVAVIGKSAEGRDIKILKVSNGNEYNVGVWLDAAIHPREWISTAVVTYIADRLVRTF 656
           Y C V ++G++ E R+ K L +S   E  VGVW       R     AV   + D L+   
Sbjct: 670 YACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVD 729

Query: 657 HEQP 668
            + P
Sbjct: 730 GDNP 733


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
 Frame = +3

Query: 183 FVKSLDTHGAITIWKEENSTMDIMVDGPRITQIAGMLHEREIPYSIAIGDVGSVLSREQ- 359
           F++ LD   A  ++KE+ +T +++    RI  +A  + E      +A+  +G  +S ++ 
Sbjct: 270 FMECLDQEKAWRLFKEK-ATEEVISSDVRIESLAKEVAEECGGLPLALATLGRAMSTKRT 328

Query: 360 ------GIKYSKNNRKPNYCEMD--WHNYHRLHVIYAFMENLSHEYPYLC 485
                  + Y K +R      M    H Y RL + Y ++++   +Y +LC
Sbjct: 329 RHEWALALSYLKKSRIHEIPNMGNTSHIYTRLKLSYDYLQDKQIKYCFLC 378


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 689 ILIRYTIRLLMKGPDESISNVRHDSCADPLTGM 591
           +LI  +IRL+ +  DES+ +    +C+DPL  +
Sbjct: 449 VLITKSIRLIGRPVDESLLSAMGAACSDPLVSI 481


>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 444 AFMENLSHEYPYLCSVAV--IGKSAEGRDIKI 533
           A +E + HE+P +C V V  +  SAE  +IK+
Sbjct: 358 ASLEKICHEFPKVCGVIVEKVEPSAEHSEIKV 389


>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 734  RVFITIRIQYWKYVPILIRYTIRLLMKGPDESISNVRHDSCADP 603
            RV   + I+Y +Y+    R+ +R L   P E ISN  HD+C DP
Sbjct: 1019 RVCDLLGIRYARYLEKEKRWKLRGL---PSE-ISNSSHDNCVDP 1058


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,998,329
Number of Sequences: 37544
Number of extensions: 394044
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)