Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p15
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    29   0.83 
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   5.9  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   7.8  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 380 SLVKKVSAAVLPPLTPIPCKQ---QRNNTGVPVNGGCRATNNPLGVCWNSCQPVASFFQA 210
           S + KV+AA  P   P+  K     +NN   P     +++N P+G+     + V     A
Sbjct: 513 SSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKSVPPTNMA 572

Query: 209 AEFNVAAGRRVMAMA 165
            E  V   R  M++A
Sbjct: 573 TERGVVGRRASMSIA 587


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 465 GGVVHLLNRIIYHPNYNRFTADSDLCILRSSTNIVLNNNVRP 590
           GG V L NRII H         + LC+  S  N++ N   +P
Sbjct: 190 GGSVGLSNRIITHRELEMVILSTSLCVQLSLLNLLPNYFPKP 231


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 352 FCHH*LQFLVNNRETIPGYRSMVVVEPPIILWGFV 248
           FC H LQ++ N+R++  G +  +V E  + ++  V
Sbjct: 22  FCDHLLQYISNSRDSKAGLKIFLVFELAVTIFNTV 56


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 312 SLLFTRNWSQWWQNCGG 362
           S+  T N+  WW +CGG
Sbjct: 110 SMCSTVNYPTWWDSCGG 126


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 223 LATGWQLFQQTPKGLLVARQPPLTGTPVLFLC-CL 324
           LA  W LF + P   L  + PP    PV F+  CL
Sbjct: 109 LALNWALFVRKPASFLFIQNPPC--IPVFFIAQCL 141


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 402 CTFGDQTAAWRFRVGSTWANSGGVVHLLNRIIYHPNYNRFTADSDLCILRSSTNIVLNNN 581
           C  G +++ +   +  ++  S  + H +     HPNY+    +S+   L   T I +N N
Sbjct: 315 CELGKESSLFSISMVKSFLVSADMAHAM-----HPNYSSRYENSNTPFLNKGTVIKVNAN 369

Query: 582 VR-PVNIAG 605
            R   N AG
Sbjct: 370 QRYTTNSAG 378


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 537 LCILRSSTNIVLNNNVRPVNIAGAN 611
           LCIL+    + L +NVRP  I   N
Sbjct: 301 LCILQDIIKLPLKDNVRPREIGNVN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,024
Number of Sequences: 5004
Number of extensions: 58724
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)