Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p15
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 35 0.070
07_01_1181 + 11203073-11203604,11204124-11204143 30 1.5
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 4.6
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 29 4.6
11_06_0313 + 22306497-22308938 28 6.0
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 28 6.0
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 28 6.0
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 28 8.0
>01_05_0801 +
25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 34.7 bits (76), Expect = 0.070
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -2
Query: 398 SSRKNRSLVKKVSAAVLPPLTPI---PCKQQRNNTGVPVNGGCRATNNPLGVCWNSCQPV 228
SSRKN + VSA +L T + P R VPV G R + P+ C+NS +
Sbjct: 75 SSRKNYADASHVSAVILGGGTGVQLFPLTSTRATPAVPVGGCYRLIDIPMSNCFNS--GI 132
Query: 227 ASFFQAAEFNVAAGRR 180
F +FN A+ R
Sbjct: 133 NKIFVMTQFNSASLNR 148
>07_01_1181 + 11203073-11203604,11204124-11204143
Length = 183
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 365 VSAAVLPPLTPIPCKQQRNNT-GVPVNG-GCRATNNPLGVCWNSCQPVASFFQAAEFNVA 192
++A+ LP P P + T G P G G ++++ W SC P+ + F + F +
Sbjct: 1 MAASPLPRWAPTPSPTRPLRTPGTPSAGAGAASSSSSSSSSWRSCVPLLTTFSSV-FGSS 59
Query: 191 AGRRVMAMAG 162
A RR ++G
Sbjct: 60 AARRGGGLSG 69
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 293 PVPRYCFSVVYKELESVVAELRRKPS*PEIC 385
P+P F + +LESVVA R+KP +C
Sbjct: 11 PIPLSRFGALVAQLESVVASARQKPPDALLC 41
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 441 VGSTWANSGGVVHLLNRIIYHPNYNRFTADSDLCILRSSTNIVLN 575
VG+ A G+ L +++ N F A++ +LRS T +VLN
Sbjct: 50 VGTVGALGNGISQPLMTVLFGNVINSFGANTSGSVLRSVTKVVLN 94
>11_06_0313 + 22306497-22308938
Length = 813
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 350 LPPLTPIPCK--QQRNNTGVPVNGGCRATNNPLGVCWN 243
+PP+T + Q + N + +N GCR + N L CW+
Sbjct: 770 IPPMTELTYDYGQSQGNVQLGINSGCRKSKNCL--CWS 805
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 462 CWPRWNQHENAMQPFDHRMCNEQ 394
C RW+ + N +Q F H +C+ Q
Sbjct: 454 CLARWDGNGNRLQEFQHHLCSVQ 476
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 504 PNYNRFTADSDLCILRSSTNIVLNNNVRP 590
P++ RF+ D D+ ++ T++ N N P
Sbjct: 369 PHWRRFSCDEDVWCIKKITSVAANGNAAP 397
>01_05_0791 +
25267885-25267930,25268258-25268713,25268802-25268832,
25268949-25269255
Length = 279
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -2
Query: 350 LPPLTPIPCKQQRNNTGVPVNGGCR-----ATNNPLGVCWNSCQPVASFFQAAEFNVAAG 186
+ P TP+ +TG P+ GG + +P G ++ P AA +A+G
Sbjct: 199 MTPTTPMTPTPTTPDTGTPIYGGSTTPPDYGSMSPPGGFGSNSPPDYGDVGAAPATMASG 258
Query: 185 RRVMAMAGL 159
R +A+AG+
Sbjct: 259 RAAVALAGV 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,617
Number of Sequences: 37544
Number of extensions: 447261
Number of successful extensions: 1298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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