Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p14
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    26   4.5  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.5  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   6.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   6.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   7.9  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 519  RLELKVKEEEIDLLKARVKNLETELQAALAKPGGKNQDIINSIKLQHEEL 668
            RL  KVKE   D  K + + L   L++ +    G N ++I+SIK  H EL
Sbjct: 916  RLLQKVKEHSEDNTKEKHQQLLDLLESLV----GNNDNLIDSIKTPHTEL 961


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -2

Query: 358 FSTGLSAEASFSVPSGCSVSASAEIGSNVSIFTTTNVGCSSLGADAGATXXXXXXX*VCS 179
           F+T ++   S S      VS+S +  S  S  TTTN   SSL +   +         V S
Sbjct: 523 FTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSSNSSALTHISSSIVSS 582

Query: 178 GS 173
           GS
Sbjct: 583 GS 584


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 492 KSDTAESGLRLELKVKEEEIDLLKARVKNLETELQAALAKPGGKNQDIINSIK 650
           K +  E G  ++ ++KE+       R+  L+T L+       GKN +I++ IK
Sbjct: 80  KENKEEKGSFVKAQLKEDAEHPFIYRLLKLQTPLETYRGFIDGKNTEILDEIK 132


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 543 EEIDLLKARVKN-LETELQAALAKPGGKNQDIINSIKLQHE 662
           E  D++   ++N ++ + + + +KP G N D +NS  L+ +
Sbjct: 29  ENCDMITNELRNAIQRQREGSQSKPQGANVDRVNSTNLEKD 69


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 282 PISADAETEQPEGTEKEASADKPVENNQTE 371
           P +++  T  PEG  K  + D+PVE+++ E
Sbjct: 370 PSNSETITVDPEGNWKLNTFDEPVESSEDE 399


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 162 IIQCLICNILQKIKTQKYERNDFQSFTVLILDKQTQLGKNRNTAHNDVVENRIF 1
           ++Q ++   LQ  K     R DF S  +    KQ +       + +D ++NR+F
Sbjct: 109 LLQSIVKQPLQNSKVDGKVRRDFGSCQITPSAKQQRKYLQYQISEDDAIKNRMF 162


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 436  SPSILMAGALLSMTSSVLPAFVS--V*LFSTGLSAEASFSVPSGCSVS-ASAEIGSNVSI 266
            S S  +A    S  S VL + ++     FST  S   S+S+PS  S +  +    SN+++
Sbjct: 864  SSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITV 923

Query: 265  FTTT 254
             ++T
Sbjct: 924  TSST 927


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 237  EEQPTFVVVKIETFEPI-SADAETEQPEGT----EKEASADKPVENNQTE 371
            E + T +   IE+ E + S D   E P+GT    E E     PVE+N +E
Sbjct: 873  ETKETEMQSPIESKEGLLSKDTHIESPQGTSLEKENEEEGKNPVESNCSE 922


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,362
Number of Sequences: 5004
Number of extensions: 31561
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)