Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p14
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.52 
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    25   0.52 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.52 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 620 EEPRHHQQHQAATRGAPEQSE 682
           E P  HQQH  A    P+Q++
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQ 39


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 267 IETFEPISADAETEQPEGTEKEASADKPVENNQTET 374
           ++ F+P  + AE +QP G     S++ P++N++ ++
Sbjct: 3   VQEFKPRGSSAEEQQPSGDILSPSSE-PLDNDKEQS 37


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 267 IETFEPISADAETEQPEGTEKEASADKPVENNQTET 374
           ++ F+P  + AE +QP G     S++ P++N++ ++
Sbjct: 3   VQEFKPRGSSAEEQQPSGDILSPSSE-PLDNDKEQS 37


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 611 ARGEEPRHHQQHQAATRGAP 670
           A G +P  HQ  QA  RG+P
Sbjct: 20  APGPQPSPHQSPQAPQRGSP 39


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 421 MAGALLSMTSSVLPAFVSV*LFSTGLSAEASFSVPSGCSVSA--SAEIGSNVS 269
           +A A    TSS++P F S    S  L+A A+    +    S   +A +  NV+
Sbjct: 107 VAAAAFGATSSMVPGFGSTAASSAALAAAAAVDAATAGDKSCRYTASLAGNVA 159


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 289  QPMLKQSSPKEQRRKPQQTSRLRTIKQKQR 378
            QP  +   P++Q+ +PQQ  + +  +Q Q+
Sbjct: 1516 QPQQQSQQPQQQQPQPQQQQQQQQQQQPQQ 1545



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 289  QPMLKQSSPKEQRRKPQQTSR 351
            QP  +Q   ++Q+++PQQ  +
Sbjct: 1528 QPQPQQQQQQQQQQQPQQQQK 1548


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 185 NSGWWRW*GCST 220
           N+G W W  CS+
Sbjct: 410 NAGMWMWLSCSS 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,504
Number of Sequences: 438
Number of extensions: 2237
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)