Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p14
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont... 34 0.10
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.18
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 30 1.7
At3g17030.1 68416.m02174 expressed protein 29 2.2
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 29 3.0
At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyo... 29 3.0
At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyo... 29 3.0
At5g49680.1 68418.m06151 cell expansion protein, putative simila... 29 3.9
At5g40450.1 68418.m04905 expressed protein 29 3.9
At5g24740.1 68418.m02920 expressed protein 29 3.9
At4g34940.1 68417.m04953 armadillo/beta-catenin repeat family pr... 29 3.9
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 29 3.9
At3g05070.1 68416.m00550 expressed protein 29 3.9
At1g67230.1 68414.m07652 expressed protein 29 3.9
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo... 29 3.9
At1g03350.1 68414.m00314 BSD domain-containing protein contains ... 28 5.2
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 6.8
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 28 6.8
At1g78430.1 68414.m09139 tropomyosin-related similar to Tropomyo... 28 6.8
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 27 9.0
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 27 9.0
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
contains weak similarity to cytoplasmic linker protein
CLIP-170 (GI:2905649) [Gallus gallus]
Length = 588
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 507 ESGLRLELKVKEEEIDLLKARVKNLETELQ 596
++ L+ ELK+ + EID LKAR+ + ETELQ
Sbjct: 380 QAELQSELKIAKSEIDELKARLMDKETELQ 409
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 563 GEGQELGDGVAGGPGQARGEEPRHHQQHQAATRGAPEQSERHDL 694
G G G G GPG R P A + APE + HD+
Sbjct: 22 GAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAPESTWGHDM 65
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 270 ETFEPISADAETEQPEGTEKEASADKPVENNQTETKAGNTDD 395
E E +A+ +TE+ +++ AD+PVE + TET+ T++
Sbjct: 1842 EETEAENAEEKTEEYVEAQQDNEADEPVEESPTETETIPTEE 1883
>At3g17030.1 68416.m02174 expressed protein
Length = 648
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 277 SSLSQPMLKQSSPKEQRRKPQQTSRLRTIKQKQRLATLMTSSTI 408
S LSQ +Q+ P ++KP+ +L+ +++RLA +T +I
Sbjct: 86 SDLSQAWHEQNKPGMSKKKPELIDQLKKGHRRRRLANTVTIDSI 129
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 533 GERGRDRLAQGEGQELGDGV---AGGPGQARGEEPRHHQQHQAATRGAP 670
GE+GRDR G Q G G G GQ RGE+ Q Q RG P
Sbjct: 28 GEQGRDRGYGGGEQGRGRGSERGGGNRGQGRGEQQDFRSQSQ---RGPP 73
>At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Frame = +3
Query: 525 ELKVKEEEIDLLKARVKNLETELQAALAKPGG--KNQ-----DIINSIKLQHEELLSK 677
+L KE+EI +LKAR+ ++E E +L K KNQ I+++K +E++SK
Sbjct: 164 KLVAKEDEIKMLKARLYDMEKE-HESLGKENESLKNQLSDSASEISNVKANEDEMVSK 220
>At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Frame = +3
Query: 525 ELKVKEEEIDLLKARVKNLETELQAALAKPGG--KNQ-----DIINSIKLQHEELLSK 677
+L KE+EI +LKAR+ ++E E +L K KNQ I+++K +E++SK
Sbjct: 164 KLVAKEDEIKMLKARLYDMEKE-HESLGKENESLKNQLSDSASEISNVKANEDEMVSK 220
>At5g49680.1 68418.m06151 cell expansion protein, putative similar
to SABRE [Arabidopsis thaliana] GI:719291
Length = 1378
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 KIETFEPISADAETEQPEG-TEKEASADKPVENNQTETKAGNTDDVIDNN 410
K ET +P+ + P+ ++ KP + ++T + +G+TD V +N
Sbjct: 337 KRETLDPVYQGIDLHLPKAFLRRDQHCSKPAQMSRTSSLSGSTDRVTSDN 386
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 495 SDTAESGLRLELKVKEEEIDLLKARVKNLETELQAALAKPGGKNQDIINSIKLQHEELLS 674
SD AE R KE+E D+++ ++ ++ E + + P + +DI + L HEE +
Sbjct: 316 SDAAEQSSREVTVDKEKEEDIIQ-NIEEVQ-ESPSVMESPTIQGEDIESKASLDHEEEMD 373
Query: 675 K 677
K
Sbjct: 374 K 374
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 492 KSDTAES----GLRLELKVKEEEIDL-LKARVKNLETELQAALAKPGGKNQDIINSIKLQ 656
+SDT E+ G RLEL K+ ++ L LKA ++ LE KLQ
Sbjct: 432 QSDTLETKPSYGARLELS-KDHDVALSLKATLQPLEAAYDGGFILAVSNFFSGSRYFKLQ 490
Query: 657 HEELLSKARGM 689
HE +LS G+
Sbjct: 491 HERILSSLNGL 501
>At4g34940.1 68417.m04953 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 664
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 560 QGEGQELGDGVAGGPGQARGEEPRHHQQHQAATRG 664
+G G G G G G + + + +QQHQ T+G
Sbjct: 353 KGSGPSSGSGSGSGSGTNKNQIKQSNQQHQNHTKG 387
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 516 LRLELKV--KEEEIDLLKARVKNLETEL 593
LRLE V K E+D+L +R++ LET+L
Sbjct: 167 LRLEASVERKAHEVDILTSRIQELETQL 194
>At3g05070.1 68416.m00550 expressed protein
Length = 144
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 288 SADAETEQPEGTEKEASADKPVENNQTETKAGNTDDVIDNNAPAIK 425
S D EQ KEA +ETK D+ ++ + PA+K
Sbjct: 3 SEDESIEQKAAARKEALKALRAAQELSETKEDGEDEAVEEDGPAMK 48
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 28.7 bits (61), Expect = 3.9
Identities = 28/128 (21%), Positives = 53/128 (41%)
Frame = +3
Query: 300 ETEQPEGTEKEASADKPVENNQTETKAGNTDDVIDNNAPAIKIEGDWQQRXXXXXXXXXX 479
E + EG E+ A + V+ Q E +A +D +I K +G +
Sbjct: 236 ERKLQEGEERVAKSQMIVK--QREDRANESDKII-------KQKGKELEEAQKKIDAANL 286
Query: 480 XXXVKSDTAESGLRLELKVKEEEIDLLKARVKNLETELQAALAKPGGKNQDIINSIKLQH 659
D S ++ +L ++E+E D+LK ++ ELQA K + + + + +H
Sbjct: 287 AVKKLEDDVSSRIK-DLALREQETDVLKKSIETKARELQALQEKLEAREKMAVQQLVDEH 345
Query: 660 EELLSKAR 683
+ L +
Sbjct: 346 QAKLDSTQ 353
>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
3.1.27.1) {Arabidopsis thaliana}
Length = 222
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 420 WPVRYCR*RHQCCQP 376
WP YC RH CC P
Sbjct: 31 WPGAYCDSRHSCCYP 45
>At1g03350.1 68414.m00314 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 470
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 608 QARGEEPRHHQQHQAATRGAPEQSERHD 691
++ + P+H ++H+ + PEQSE +D
Sbjct: 18 ESESDSPKHSEEHEHPEQEHPEQSESND 45
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +2
Query: 563 GEGQELGDGVAGGPGQARGEEPRHHQQHQAATRGA--PEQSERHDL 694
G G G G GPG R P A + A PE + HD+
Sbjct: 22 GAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPESTWGHDM 67
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 599 GPGQARGEEPRHHQQHQAATRGAPEQSERHD 691
GP +AR EP+ Q + PE+S R D
Sbjct: 204 GPSRARNSEPQRQQLPSHGSSSFPERSGRQD 234
>At1g78430.1 68414.m09139 tropomyosin-related similar to Tropomyosin
1 [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae};
similar to enterophilin-2L (GI:12718845) [Cavia
porcellus]; similar to latent nuclear antigen
(GI:5669894) [Human herpesvirus 8]; similar to multiple
ligand-binding protein 1 (GI:1403575) [Streptococcus
sp.]
Length = 326
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 492 KSDTAESGLRLELKVKEEEIDLLKARVKNLETE 590
K+ +E EL KE++I++LKAR+ +LE E
Sbjct: 142 KAKESEKTKNDELASKEDQINVLKARLYDLEKE 174
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 258 VVKIETFEPISADAETEQPEGTEKEASADKPVENNQTETKAGNTDD 395
+VK+ET IS E + E ++ A D+ E +T A +T++
Sbjct: 209 IVKVETDVHISDHGEEPKEEDKDQFAQPDESGEEKETSPVAASTEE 254
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 489 VKSDTAESGLRLELKVKEEEIDLLKARVKNLETELQAALAKP 614
V SD + G++ +++ ++E ++ V N+E E Q+ + KP
Sbjct: 976 VCSDVSVRGIQEAVEMSDQEFGEPRSTVTNIEDEQQSQIVKP 1017
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,435,165
Number of Sequences: 28952
Number of extensions: 169563
Number of successful extensions: 843
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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