Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p13
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 84 4e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 53 1e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 41 3e-05
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 40 8e-05
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 1.8
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 1.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 3.1
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 4.2
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 24 4.2
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 23 7.3
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 23 7.3
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 84.2 bits (199), Expect = 4e-18
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = +2
Query: 146 MREIVHIQAGQCGNQIGXKFWEVISDEHGIDATGAYSGDSDLXLERINVYYN 301
MREIVHIQAGQCGNQ+G FW I+DEHG+D+ G Y G S+ ER+NVY+N
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFN 52
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.8 bits (121), Expect = 1e-08
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +2
Query: 149 REIVHIQAGQCGNQIGXKFWEVISDEHGIDATGAYSGDSDLXLERINVYY 298
REI+ +QAGQCGNQIG +FW+ + EHGI G + ++R +V++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFF 52
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 41.1 bits (92), Expect = 3e-05
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +2
Query: 146 MREIVHIQAGQCGNQIGXKFWEVISDEHGIDATG 247
MREI+ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 39.9 bits (89), Expect = 8e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 146 MREIVHIQAGQCGNQIGXKFWEVISDEHGIDATGAYSGDSDLXLERINVYYN 301
MRE++ + GQ G QIG WE+ EHGI G + +S+ + + N Y N
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSE--VHKNNSYLN 50
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 229 VLVRDYFPELXSDLIPALTRLDVDDFPHDCT 137
+ +Y P S+ + + RLDVD F H T
Sbjct: 625 IAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 214 YFPELXSDLIPALTRLDVDDFPHDCTKNLEPPEXN 110
+F E+ + P +LD+DD + + P E N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 3.1
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 125 FQIFSAIMREIVHIQAGQCGNQIGXKFWEVISDEHGIDATGAYSGDSD 268
F + S I I C + +W+V+ G+ TGA S SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 201 FXPI*FPH*PAWMWTISLMIALKIWN 124
F I FP MWTI L++ L +W+
Sbjct: 20 FFFILFPLVSFLMWTIGLIVLLGLWS 45
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 4.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 171 AWMWTISLMIALKIWNPPNXI 109
AW+W ++LM+ + PN +
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -2
Query: 150 LMIALKIWNPPNXILN--KHFREFDHVKK 70
L I W PP KH REF+ +KK
Sbjct: 132 LSIGRPSWLPPKSKEEEKKHMREFEQIKK 160
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 212 VISDEHGIDATGAYSGDSDL 271
V SDE A+G YSGD +L
Sbjct: 234 VYSDEKFFYASGRYSGDVEL 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,044
Number of Sequences: 5004
Number of extensions: 18584
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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