Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p10
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    28   1.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   8.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   8.7  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 221 LLDPGAYQISD-TDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYR-KKNTKLPKYDV 394
           LL+P  Y  ++  +  +W    ++S T   + +  K W     NP Y+  K T+LP  + 
Sbjct: 27  LLNPSGYHRAEKVENNEWTFARYDSYTGVELVDLDKRWDILSLNPNYKLPKLTELPA-EA 85

Query: 395 TTAT 406
           T +T
Sbjct: 86  TNST 89


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 245 ISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKNTKLP-KYDVTTAT 406
           + D+DT +  K  FN   P + R+ +   +H ++   +  K++K P K +V T T
Sbjct: 55  VGDSDTTENIKSPFNGQWPFSRRSSQSS-SHPVFEETHWSKHSKRPGKLNVLTPT 108


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 537 PKRIFKGLTLQSAVSADYQSEPPVSKSININTTGFNGFSTDFYRGWKWSKWTSPRLKYSI 716
           P  IF G TLQ+  S   + +        IN +G N     +  G   S+W   +LK   
Sbjct: 130 PGEIFVGATLQNESSTSTEHKDIEQLETEINESGIN-----YKIGDNGSRWRMMKLKRVF 184

Query: 717 DQS 725
           D +
Sbjct: 185 DMA 187


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 209 KYVTLLDPGAYQISDTDTKKWNKIAFNS 292
           +YV +L+PGA  ++D++T  + K A ++
Sbjct: 61  RYVDMLNPGATFVNDSETFNFYKNALSA 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,987
Number of Sequences: 5004
Number of extensions: 71566
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)