Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p10
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 31 1.3
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 29 3.9
09_02_0041 - 3350332-3350460,3350560-3350649,3350732-3350812,335... 29 3.9
01_03_0136 - 12897284-12897399,12897679-12897727,12898563-128986... 29 5.2
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469... 28 6.9
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 28 6.9
07_03_0145 - 14376610-14377992 28 9.1
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -1
Query: 531 SLGILHCRPILFSLNKYRHYLLRSCKETLLPNQIWYSFHMENV 403
S+ + C+ + +S+ + + L+ SC ++ N W H+EN+
Sbjct: 192 SIWLSRCKILYYSIFSWLYGLVGSCAHLVMVNSSWTRSHIENI 234
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 305 NIRNEKKLWTHAIYNPEYRKKNTKLPKYDVTTATF 409
NI + K+W++ IY P + P+Y V+ A F
Sbjct: 202 NIGDMLKVWSNGIYQPTLHRVVNNSPRYRVSVAFF 236
>09_02_0041 -
3350332-3350460,3350560-3350649,3350732-3350812,
3351377-3351423,3351844-3351909,3352019-3352077,
3352572-3352639,3352723-3352786,3352907-3353025,
3353152-3353267,3353509-3353542
Length = 290
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 305 NIRNEKKLWTHAIYNPEYRKKNTKLPKYDVTTATF 409
NI + K+W++ IY P + P+Y V+ A F
Sbjct: 212 NIGDMLKVWSNGIYQPTLHRVVNNSPRYRVSVAFF 246
>01_03_0136 -
12897284-12897399,12897679-12897727,12898563-12898661,
12898781-12898886,12899209-12899304,12899394-12899542,
12899629-12899904,12900229-12900317,12900921-12901013,
12901110-12901205,12901337-12901444,12901703-12901895,
12902608-12902639,12902997-12903066
Length = 523
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +3
Query: 414 YESYTKFDLVEEFLCNCGVDNVCTCSMKTELVDSVKCQGKIPKRIFKGLT-LQSAVSADY 590
Y+ Y D+ + C D+ S D + R++ G S+ DY
Sbjct: 283 YDQYDMIDIFNVYAPKCNTDDSSLFSTSYSTADMNAKKRLKGTRMYSGYDPCYSSHIEDY 342
Query: 591 QSEPPVSKSININTTG 638
++ V KS++ NT+G
Sbjct: 343 MNKMDVQKSLHANTSG 358
>12_02_0725 -
22545423-22546251,22546352-22546547,22546791-22546973,
22547076-22547275,22548030-22548133
Length = 503
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 168 KWPSTWKAGFLRPQNT-LHFWXXXXXXXXXXXXXNGTKLHLIHLLREIFAMKRNYGRTPF 344
K P W F R T L++W + + +HL R +++N R
Sbjct: 278 KRPEGWAYRFRRTNTTILYYWSATLCDLEPLRRSDQATGYAMHLDRPPAFLQKNLHRFHV 337
Query: 345 IILNTG 362
IILNTG
Sbjct: 338 IILNTG 343
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -2
Query: 455 KKLFYQIKFGIAFIWKTWLS*HHTWAIWYFFSCIQDYKWRAS 330
+K+ + + K W+S H+ W +W S + Y RA+
Sbjct: 838 QKMLLACGASLTYTTKEWVSNHYKWIVWKLASLERCYPTRAA 879
>07_03_0145 - 14376610-14377992
Length = 460
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 DTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRK-KNTKLPK 385
D D KKW + P+N K H + E + TK PK
Sbjct: 51 DVDKKKWKSVIIGDPRPKNRIKNAKAEDHKVAKDESSSFQRTKKPK 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,305
Number of Sequences: 37544
Number of extensions: 390620
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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