Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p10
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021487-6|CAA16361.2| 325|Caenorhabditis elegans Hypothetical ... 31 1.2
Z32683-15|CAE17933.2| 375|Caenorhabditis elegans Hypothetical p... 30 2.0
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 29 2.7
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 29 2.7
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 29 2.7
U28730-5|AAA68259.1| 470|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF026206-5|AAK39307.1| 141|Caenorhabditis elegans Hypothetical ... 28 6.2
AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical ... 28 8.1
>AL021487-6|CAA16361.2| 325|Caenorhabditis elegans Hypothetical
protein Y45F10B.11 protein.
Length = 325
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = -1
Query: 543 VLEFSLGILHCRPILFSLNKYRHYLLRSCKETLLPNQI-----WYSFHMENVAVVTSYLG 379
+ + S+ ++ P+ F+ + L C++ L P Q W+S ++ ++ ++ +G
Sbjct: 152 ITQLSIPFIYIWPLFFTFTLFP--ALGFCRQILGPYQFGAIYFWFSGNLFDIKLIKGLIG 209
Query: 378 NLVFFFL 358
NL+F+F+
Sbjct: 210 NLLFWFI 216
>Z32683-15|CAE17933.2| 375|Caenorhabditis elegans Hypothetical
protein R07E5.17 protein.
Length = 375
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 453 ETLLPNQIWYSFHMENVAVVTSYLGNLVFFFLYSGL*MACVHN 325
ET +I Y FH N + +G LVF ++ GL MA ++N
Sbjct: 332 ETTCIAEILYPFHFLNSLEMPYQIGILVFSMIFGGLIMAKLNN 374
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 588 YQSEPPVSKSININTTGFNGFST----DFYRGWKWSKWTSPRLKYSIDQSPWT 734
Y++ +K +++N T F + RGW+ W S + I +S WT
Sbjct: 200 YETLQRAAKPVSVNVTELLAFENREPVEDVRGWRRLDWNSEMTRQGITKSQWT 252
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 588 YQSEPPVSKSININTTGFNGFST----DFYRGWKWSKWTSPRLKYSIDQSPWT 734
Y++ +K +++N T F + RGW+ W S + I +S WT
Sbjct: 94 YETLQRAAKPVSVNVTELLAFENREPVEDVRGWRRLDWNSEMTRQGITKSQWT 146
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 588 YQSEPPVSKSININTTGFNGFST----DFYRGWKWSKWTSPRLKYSIDQSPWT 734
Y++ +K +++N T F + RGW+ W S + I +S WT
Sbjct: 200 YETLQRAAKPVSVNVTELLAFENREPVEDVRGWRRLDWNSEMTRQGITKSQWT 252
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 588 YQSEPPVSKSININTTGFNGFST----DFYRGWKWSKWTSPRLKYSIDQSPWT 734
Y++ +K +++N T F + RGW+ W S + I +S WT
Sbjct: 94 YETLQRAAKPVSVNVTELLAFENREPVEDVRGWRRLDWNSEMTRQGITKSQWT 146
>U28730-5|AAA68259.1| 470|Caenorhabditis elegans Hypothetical
protein K10B2.2a protein.
Length = 470
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 318 KRNYGRTPFIILNTGK-KIPNCPSMMSRQPRFPYESYTKFDLVEEFLCNCGVDNVCTCSM 494
K+N+ + + G PN + M P + Y + + DL + NC +N+ TC +
Sbjct: 186 KKNFPNFKGVAIGNGALNFPNNYNTMV--PFYYYHALVRDDLYNDIARNCCNNNIGTCDI 243
Query: 495 KTELVDSVKCQGKI 536
++ D C+ K+
Sbjct: 244 YSKFFDP-NCRDKV 256
>AF026206-5|AAK39307.1| 141|Caenorhabditis elegans Hypothetical
protein T28B4.3 protein.
Length = 141
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 ESYTKFDLVEEFLCNCGVDNVCTCSMK--TELVDSVKCQGKIPKRIFKGLTLQSAVS 581
+ YT D+ +C D + C K ++ DS GK+PK+++ +Q A S
Sbjct: 76 KEYTPIDVKLNIYHDCN-DGIKPCQRKFGIKIPDSYTSSGKVPKKVYDAGVIQLAGS 131
>AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical
protein Y59A8A.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 375 NCPSMMSRQPRFPYESYTKFDLVEEFLCNC 464
N P M+ R P P ++ T L+E L C
Sbjct: 289 NAPYMVERDPNAPIQTLTNRQLIETALAKC 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,626
Number of Sequences: 27780
Number of extensions: 384956
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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