Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p09
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.6
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 28 1.6
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 5.0
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 5.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.0
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c... 26 6.6
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.8
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -1
Query: 661 FSLTYCMYLLIQIKIASVYFEF----YSSGLIDTFATLVSSMISETL 533
+S +Y +++IQ+ + ++ F YSSG+ID + L SS+ TL
Sbjct: 100 WSHSYKWWIVIQVSVITIVVTFASSVYSSGIIDIASELHSSIPVSTL 146
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 91 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 270
S Y + N ++ + YH+ S ST+ +E P PD L+ KL+
Sbjct: 50 SSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSKLQ- 108
Query: 271 LTTKPLCDCSN 303
+ K C+ S+
Sbjct: 109 -SCKSACENSS 118
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 622 LFELTNTYNKSKKKNIQFFKSETNGYYYFRY 714
L EL +TY K K ++I+ F T Y Y Y
Sbjct: 1794 LIELLDTYLKRKFRSIKDFLKHTVSYLYSYY 1824
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 226 TRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKK 387
++ PD L R+ +T LC+ + C C ++ ++ D C FG+ +
Sbjct: 2 SKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQ 55
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Frame = +1
Query: 61 QQQCIYIAK-HSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKN------CTKDPNELE 219
Q Q I I+K + T T+DV+NK + L K S K+ N CT + +E+
Sbjct: 241 QMQKIKISKLGTAETQTEDVMNKSSQKENNDILRKHKTSVKFPTNLDALNSCTMENHEIN 300
Query: 220 D--PTRKQPDEQLTR 258
+ T K D +T+
Sbjct: 301 ELTATNKMNDGPITK 315
>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 50
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 253 TRKLKPLTTKPLCDC-SNCTCKDCPD 327
T + K KP CDC S C C+DC +
Sbjct: 4 TTQCKSKQGKP-CDCQSKCGCQDCKE 28
>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 64 QQCIYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRK 234
+Q + A+ YY + +K +F + S +YH+ + + NE+ED R+
Sbjct: 59 EQSKFAAEEQYYLGNYSLA--KKFAFQALDVPTDSSSIEYHRLSSGEINEIEDIIRR 113
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 516 IHRGKHKVSDIIDETNVANVSIKPEE*N-SKYTEAI 620
+ R +HK+SD + E N N ++ ++ N K+ +A+
Sbjct: 98 VERLEHKISDYVQEINSLNSQLQIQKSNPEKHEDAV 133
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 580 LNQRNKIQNTLKQFLFELTNTYNKSKKKNIQFFKSETNGYYYFRYDVSPYLFMITN 747
L +++ + N K + + K + + FKS T GY Y D++ +L N
Sbjct: 2676 LLEKSALINQYKTIILNIVKASVKFYQVLRENFKSSTQGYVYTPRDLTRWLISFKN 2731
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,085
Number of Sequences: 5004
Number of extensions: 59274
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -