Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4p08
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 28 1.6
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 28 1.6
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.6
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 2.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.7
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 3.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 3.7
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 26 4.9
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 6.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 8.6
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 556 KVSNKTNKNITQHESVSNANRRAIA 630
++S TN NIT ES SN+N + I+
Sbjct: 288 EISQNTNANITVEESDSNSNEKFIS 312
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 556 KVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRD 666
K S + N TQ ++ +N N + E+E N P+ DRD
Sbjct: 107 KKSRSKSANGTQKKNANN-NEEQLDEEEQNDPYLDRD 142
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 499 TNVYESTENFHFNGDEPTEKVSNKTNKN 582
+ +Y + +F + D T VSN TNK+
Sbjct: 334 SQMYSAASHFRYRSDPSTRHVSNSTNKS 361
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 435 YVHSEGVSVR*IARETSRVGEYKCLRI 515
Y+HS+G++ R I E + EY LRI
Sbjct: 574 YIHSQGIAHRDIKPENILISEYGVLRI 600
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 475 ERQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPF 654
+ +A + TN +S+ N + P + NK V N N EDE NV
Sbjct: 46 DSEAAKITTNEKQSSPVDSHN-ESPNDTTINKGEDG--NENEVDNVNNNDKKEDEDNVEE 102
Query: 655 NDRD-DINEPNIE 690
N+ + D NE E
Sbjct: 103 NEEEADANEEEEE 115
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 3.7
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 415 IMLAEAFMYIQR--VFQFGRSRERQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNIT 588
I L E M I R +F+ + R+A+ + + +F+ NG + + SN +N T
Sbjct: 937 IGLTEQQMRIDRWNIFEERANLLRKAKDPSPKSASESSSFYQNGSDIDDNDSNSSN---T 993
Query: 589 QHESVSNANRRAIAEDESNVPFND 660
+ + NAN + ++ N F D
Sbjct: 994 SNHTTENANAQQRKLEDLNRSFED 1017
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 544 EPTEKVSNKTNKNITQHESVSNANRRAIAE 633
EP EKV+ I HES+ N +AE
Sbjct: 14 EPFEKVNENYKHEIDYHESILNKKTAVLAE 43
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 373 FCRPGPLDGMFCIHWLALCKDKGHRRR 293
F + G+F +HW + D+GH R
Sbjct: 636 FSQQSHSSGLFSVHWFRVVLDEGHNIR 662
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 457 QFGRSRERQAELVNTNVYESTENFHFNG--DEPTEKVSNKTNKNITQHESVSNANRRAIA 630
+FGR +ER +++ +YES H + +E E++S T K + E N +
Sbjct: 4 RFGRRKERNGDML--PLYESQSPQHLDSLENENDERISKLTGKVKSLKELTMNIGTEITS 61
Query: 631 EDESNVPFNDRDD 669
+ ND D
Sbjct: 62 STKLMESMNDSFD 74
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 593 CCVMFLLVLLETFSVGSSPLKWKF 522
C V+F +V L ++ SSP KW +
Sbjct: 133 CYVLFAIVCLLAAALTSSPYKWAY 156
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 493 VNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRR 621
+N+N + EN HF D+ + N +N+ + + + + R
Sbjct: 110 INSNSNKGKENMHFVLDDNGDSKGNASNQQVERDDKLDMETTR 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,485
Number of Sequences: 5004
Number of extensions: 64744
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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