Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p08
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0360 + 9400082-9400524,9406729-9406936                           31   0.73 
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   6.8  
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393           28   6.8  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    28   9.0  

>02_02_0360 + 9400082-9400524,9406729-9406936
          Length = 216

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 511 ESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPN 684
           ES E+   NGD+  E  ++ T + ++  E VSN +     +D  +   +  DD   PN
Sbjct: 153 ESEEDDDDNGDDEEEVSNDDTTEEVSDEEEVSNDDTTEEEDDLEDDDKSSSDDDEAPN 210


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 562  SNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGSVIN 726
            + K  K+    E +SNA   ++ + +S +  ND++  N+P+   G +  IG+ +N
Sbjct: 1226 TTKLEKSSKGSEVLSNAKEGSLKQSQSPLHANDKEP-NQPDQSNGNSSRIGAGLN 1279


>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
          Length = 322

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 301 RRRGLDQSWTL-LHVRCRHGSRSTTAD--ISQSTPRGEWRPNSVECSRL 164
           R R L    TL  H R RHG+R         +   RG+WR +   C RL
Sbjct: 225 RARPLKDFRTLQTHYRRRHGARDFACRRCAKRFAVRGDWRTHEKNCGRL 273


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 562 SNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIE 690
           S+K      Q    ++A  +   EDE ++ F + + I+ P+IE
Sbjct: 289 SSKARSGAPQRAMAASATSKEEKEDEPSMQFEESESISTPSIE 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,120
Number of Sequences: 37544
Number of extensions: 440869
Number of successful extensions: 1199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)