Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p08
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine rece...    30   1.5  
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        30   2.0  
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    30   2.0  
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    30   2.0  
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    30   2.0  
AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical ...    29   2.6  

>U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein35 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 618 SISVRYGLVLCDVLVSFIGNFLRWLVAIEMEVLC*FVNI 502
           S  + + L + DVLV FI + L  ++AI+  V C + N+
Sbjct: 69  SFKIMFHLAVTDVLVIFINSILTGILAIQGAVYCTYPNL 107


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 502 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 651
           N+  ST++   NG+E  +K ++   +N     S S    R    D +N P
Sbjct: 23  NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 72


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 502 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 651
           N+  ST++   NG+E  +K ++   +N     S S    R    D +N P
Sbjct: 138 NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 187


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 502 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 651
           N+  ST++   NG+E  +K ++   +N     S S    R    D +N P
Sbjct: 134 NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 183


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 502 NVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 651
           N+  ST++   NG+E  +K ++   +N     S S    R    D +N P
Sbjct: 23  NILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 72


>AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical
           protein T04B8.2 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +1

Query: 487 ELVNTNVYESTENFHF---NGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFN 657
           +++  N Y +TE+  F   N D   E ++    K +   + + N  R    +D S++  +
Sbjct: 145 KILGDNSYITTEDMEFILKNFDLKYEFLTRCLQKTMIDFKLLVNLPRLEFWKD-SDLTLD 203

Query: 658 DRDDINEPNIEFGKNEIIGSVINDNI 735
               +N   I FGKN I+   +ND I
Sbjct: 204 HLKMMNCKTIRFGKNAIVPKQLNDYI 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,181
Number of Sequences: 27780
Number of extensions: 374211
Number of successful extensions: 1142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)