Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p07
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.62 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 603 MNRFKLVGNLCYHYERKKPL--STHNACAPPHSSCQLCASS 719
           + RF   GN+ Y   R +PL  S      PP    + CA+S
Sbjct: 10  LERFCTYGNVNYRQRRSQPLKISCLKTTPPPEEDNRGCAAS 50


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 215 VYCCDTRPKTPLRRSSCCDSKEF 283
           VYCCD      LR+   C  K++
Sbjct: 160 VYCCDNNFNVFLRQVFTCRCKDY 182


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 639 HYERKKPLSTHNACA 683
           H++R+ P   HN+C+
Sbjct: 6   HFDRESPNIDHNSCS 20


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 632 KVTHKFEPVHPQNGNDEPRRRDQLD 558
           KV  K +   P N ND+ + R ++D
Sbjct: 316 KVRAKTQNATPANNNDKRKSRGEVD 340


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 632 KVTHKFEPVHPQNGNDEPRRRDQLD 558
           KV  K +   P N ND+ + R ++D
Sbjct: 316 KVRAKTQNATPANNNDKRKSRGEVD 340


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,370
Number of Sequences: 336
Number of extensions: 3466
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)