Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p04
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    33   0.058
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   3.8  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   5.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   6.7  

>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 313 LNIHFIFVAKSFIFCIVIVECLKVHKATLNMHDIR 417
           LN+  + VAK+++ C+ + E L  H+ TL  H ++
Sbjct: 134 LNLPVVGVAKNYLHCVGLTESLDAHRETLKKHVLK 168


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 319 Y*ASKHFLVSSRFTSQSLFTPFYGTPGFFY 230
           Y   ++ L+SS+F SQS F  +  T G FY
Sbjct: 118 YTKDENSLLSSKFLSQSNFKSYNSTHGEFY 147


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 28  FVYAGMYDYLKAMLQKPDLEQ 90
           FV  G+YDY+ +M  K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 273 WEVNRDETRKCFDAQYSFYIRC 338
           ++ N DE +KCF  +   ++RC
Sbjct: 599 YDSNHDEKQKCFSLREILFLRC 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,176
Number of Sequences: 5004
Number of extensions: 55582
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)