Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p04
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0280 + 2152000-2153510,2153633-2153732                           31   0.99 
04_04_1367 - 32974757-32975499,32975957-32976179                       29   4.0  
11_04_0444 + 17816207-17817436                                         28   7.0  
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    28   7.0  
07_03_0999 - 23216665-23217419,23217626-23217956                       28   9.2  
06_03_0334 - 19660526-19661755                                         28   9.2  
01_01_0867 - 6773411-6774682,6775008-6775643                           28   9.2  

>03_01_0280 + 2152000-2153510,2153633-2153732
          Length = 536

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 417 SNVMHIQSCFVNFQTFYYYNTKNER 343
           S+++ +  CF+ F  FYYY+ K++R
Sbjct: 4   SSILQLTLCFLCFSVFYYYHIKSKR 28


>04_04_1367 - 32974757-32975499,32975957-32976179
          Length = 321

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 234 FTLLTKEPI*CLNGNRFLKFCSR 166
           FT+L+K+ +   NGN +LK C+R
Sbjct: 281 FTMLSKDVVFDFNGNYYLKLCAR 303


>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 360 NTKNERFCNEYKMNIERRNISWFHPDSPPNPYSPRFTVLPVF 235
           N+ + +F   Y  N     +  FHP  PP+ Y P +   P+F
Sbjct: 27  NSPSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQP-YRHPPIF 67


>02_02_0490 -
           10879761-10879861,10879946-10880185,10880274-10880337,
           10880426-10880731,10881098-10881312,10881417-10881711,
           10882193-10882357,10882477-10882527,10882657-10883109,
           10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 304 HFLVSSRFTSQSLFTPFYGTPGFFYFVDKGTNLV 203
           H+L    +TS  L + F+G P F   V  GT L+
Sbjct: 260 HWLKKDVYTSAMLISVFFGAPAFIAMVTFGTCLL 293


>07_03_0999 - 23216665-23217419,23217626-23217956
          Length = 361

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 360 NTKNERFCNEYKMNIERRNISWFHPDSPPNPYSPRFTVLPVF 235
           N+ + +F   Y  N     +  FHP  PP+ Y P +   P+F
Sbjct: 27  NSLSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQP-YRHPPIF 67


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 360 NTKNERFCNEYKMNIERRNISWFHPDSPPNPYSPRFTVLPVF 235
           N+ + +F   Y  N     +  FHP  PP+ Y P +   P+F
Sbjct: 27  NSLSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQP-YRHPPIF 67


>01_01_0867 - 6773411-6774682,6775008-6775643
          Length = 635

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 300 KCFDAQYSFYIRCKIFHFLYCN 365
           +CF A YS++  CKI+H +  N
Sbjct: 236 ECFCAAYSYHSGCKIWHSMLLN 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,437
Number of Sequences: 37544
Number of extensions: 311942
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)