Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4p01
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    85   5e-18
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.7  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   1.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   2.9  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    24   8.9  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    24   8.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
 Frame = +3

Query: 78  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 254
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 255 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYM 359
              E+  ++V + RL  T +F DKKSY  Y+K YM
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYM 92


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 115  ISSPVIMSL*IFILMDWRRLKII 47
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 137 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 27
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 180 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 323
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 293 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 195
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 98  NVLIDLH-FDGLEAIKNNKNRKNGFSPQQLNR 6
           N  + +H F G++++++++ RKN F    LN+
Sbjct: 7   NPELQIHGFIGVDSLQSSRKRKNDFDDFPLNK 38


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 188 SRHQPTGHFVNNFIDQFHFVSVREHLITSD 99
           SRH+   HFV +F D  ++  V E+    D
Sbjct: 65  SRHRNIIHFVESFEDNVYYYVVLEYCPLGD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,926
Number of Sequences: 5004
Number of extensions: 25963
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)