Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o24
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    29   0.46 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   1.1  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    28   1.4  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   1.4  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.8  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.4  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.4  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    26   4.3  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.6  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    26   5.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   5.6  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   7.5  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   7.5  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   7.5  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    25   7.5  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   7.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.9  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.9  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 324 TDLDSINIFVPETINNQYIITEDKDTGQDMLHHLDD 431
           TD +   +F+P   +N ++I E   T     HH DD
Sbjct: 769 TDENMFEVFLPTAFSNSHLIDEIDSTEYSGSHHTDD 804


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 25/106 (23%), Positives = 42/106 (39%)
 Frame = +3

Query: 204 ESLRRQLMDDNYDYQPSETEELLHPQDITRRQGVALNKQDTDLDSINIFVPETINNQYII 383
           E+  + L+DDN D   S +E L+   + T  + ++     + +DS N+            
Sbjct: 684 EARPQLLLDDNNDSSSSSSEHLISFNNHTGNKILSRQTTSSSIDSNNVQSNIEFLKGLNA 743

Query: 384 TEDKDTGQDMLHHLDDRPTDIMTSDQRDYVELHDDGTKPTQQAKYK 521
           T  + T Q  + H       I TS +R       +   P Q +K K
Sbjct: 744 THARSTSQ--VSHTQRLQQSISTSLERVKSNTKKESNSPRQVSKLK 787


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 626 GSVVEADDGHSVFFFFLYEPSGAHTPTTGVFYL*YFVFSLLRGLS 492
           G+ +     H    F L+ PSG  TP   +  L  FV  + RGLS
Sbjct: 136 GATILGLQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLS 180


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +3

Query: 288 TRRQGVALNKQDTDLDSINIFVPETINNQYIITEDKDTGQDMLHHLDDRPTDIMTSDQR 464
           +R+ G A    + ++DS N F P  +N   I+T  +D+ +D+   L++  +  + + QR
Sbjct: 292 SRQTGPASETINDEIDSPNFFFPTPLN---IMTTTQDSSRDVQLSLNNVQSQALNNRQR 347


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 204 ESLRRQLMDDNYDYQPSETEELLHPQDITRRQGVALNKQDTDLDSINIFVPETINNQYII 383
           +S  RQ   +  +Y  S    + H + +  R GVA++  D  L +++     T NN  I+
Sbjct: 142 QSPLRQDELERKEYNESMQSSVTHKRPLVTR-GVAMSIDDKALKALSDLKSSTENNLVIL 200

Query: 384 TEDKD 398
           + DK+
Sbjct: 201 SIDKE 205


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 246 QPSETEELLHPQDITRRQGVALNKQDTDLDSINIFVPETINNQ-YIITEDKDTGQDMLHH 422
           QPS+  + L   D+   +   ++++   L S    VP+ IN+  Y++ +D+    D +++
Sbjct: 232 QPSKNSQTLSNGDLQHSKVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDRVYY 291

Query: 423 LD 428
            D
Sbjct: 292 TD 293


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 174 TESNSSRVLVESLRRQLMDDNYDYQPSETEELLHPQDITRR 296
           +ES S+ ++   L+ + +D N+    +  E L+H  + +RR
Sbjct: 214 SESGSNEIVNAKLKNEQLDSNFTLLDAYLEPLVHLHEYSRR 254


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 219 QLMDDNYDYQPSETEELLHPQDITRRQGVALNKQDTDLDSINIFVPETINNQY 377
           Q +++ +D    +TEE L      + Q      QDT L S+ + +P TI + +
Sbjct: 435 QPLENYHDGNGEQTEECLRDLRHNQSQDFETVSQDTSLTSVTV-LPRTIRDVF 486


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 643 SLNSGKVPSSRLMMATPSSFSSCMNRLEPILRRLG 539
           ++N G+ P S L+   PS+ SS   RL   L+R G
Sbjct: 172 AINKGRFPKSLLLQYVPSNISS--ERLFKTLKRHG 204


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 162 KFKITESNSSRVLVESLRRQLMDDNYDYQPSETEELLHP 278
           K+  T S    V V  +R   +  NYD++    + L+HP
Sbjct: 96  KWLATSSEDGTVKVWDMRAPSVQRNYDHKSPVNDLLIHP 134


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 408 DMLHHLDDRPTDIMTSDQRDYVELHDDGTKPTQQAKYKILKVKNPSRRSMGSR 566
           D+ + L   P DI T +Q+D  E   +         Y   K+   +RR+ G +
Sbjct: 11  DISNSLKAFPVDIATDNQKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKK 63


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 213 RRQLMDDNYDYQPSETEELLHPQDITRRQGVALNKQDTDLDSINIFVPETINN 371
           R  ++D +    PSE+E  +   ++TRR  V  +     LD+  ++V + + N
Sbjct: 692 RLTVIDRSQSVVPSESEFSIAGANLTRRNAVDFS---VSLDTYELYVSDEVEN 741


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 403 PVSLSSVIMYWLFIVSGTNMLMESKSV 323
           P S++ ++   LF++ G  ML ESK V
Sbjct: 86  PKSITHILGGTLFLIFGVKMLKESKEV 112


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 62  LCVSCFEQNLFP 97
           +C+SC++QN FP
Sbjct: 259 VCISCYQQNRFP 270


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 403 PVSLSSVIMYWLFIVSGTNMLMESKSV 323
           P  L+ ++   LF++ G  MLME+K V
Sbjct: 109 PRKLTDILGGVLFVIFGIKMLMEAKEV 135


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 111 LANNNGNKFCSKHETHR 61
           L NN GNK+  KH T++
Sbjct: 153 LGNNRGNKYSRKHITYK 169


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/102 (19%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
 Frame = +3

Query: 246  QPSETEELLHPQDITRRQGVALNKQDTDLDS-INIFVPETINNQYIITEDKDTGQDMLHH 422
            +  + EEL + +D T  Q      +  +L+S +N    +++ ++   ++ ++  QD+   
Sbjct: 3929 EDDDLEELANEED-TANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3987

Query: 423  LDDRPTDIMTS-DQRDYVELHDDGTKPTQQAKYKILKVKNPS 545
            ++D P D+  S +++ + E +++    T+Q   +     N S
Sbjct: 3988 VNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNES 4029


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 638 ELREGSVVEADDGHSVFFFFLYE 570
           ++ EG +   ++ H VFF  LY+
Sbjct: 289 KIEEGDIESIENSHPVFFLVLYD 311


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 354 PETINNQYIITEDKD----TGQDMLHHLDDRPTDIMTSDQRDYVELHD 485
           P  INNQY+I   KD    T Q    HL D    + TS+    + LH+
Sbjct: 100 PSGINNQYVIRNPKDVYYATVQAGKLHLFD---PVKTSELLHVINLHE 144


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 201 VESLRRQLMDDNYDYQPSETEELLHPQDITRRQGVAL-NKQDTDLD-SINIFVPETINNQ 374
           V+ +    +D  Y   PS+T  LLHP   +    + + N   ++LD  I   +  +I++ 
Sbjct: 110 VDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNAGHSNLDHPIRPSLQSSISSN 169

Query: 375 YIITEDKDTGQDMLH 419
            II        D +H
Sbjct: 170 RIIKSPGIKEDDYMH 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,892
Number of Sequences: 5004
Number of extensions: 55867
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)