Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o24
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 33 0.27
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286... 31 0.63
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 30 1.9
10_08_0843 - 20960249-20960446,20960583-20960987,20961092-209612... 28 5.9
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 5.9
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 5.9
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116... 28 5.9
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 28 5.9
12_01_0508 + 4027113-4028522 28 7.7
05_03_0004 - 7305986-7306052,7306174-7306490 28 7.7
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 377 HYHRGQGHRTGHASPPGRQTDGHHDQR 457
HYH G R H PP +GHH R
Sbjct: 556 HYHGGHHQRRRHHHPPAWDVEGHHHDR 582
>12_01_0999 - 10128057-10128143,10128346-10128516,10128602-10128677,
10128787-10128917,10129007-10129111,10129215-10129391,
10129475-10129623,10129715-10129826,10131819-10132070,
10132323-10132444,10132537-10133371,10133386-10133489,
10133582-10133647,10133766-10133888,10133975-10134151,
10134217-10134387,10134478-10134957,10135357-10135369
Length = 1116
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/88 (22%), Positives = 44/88 (50%)
Frame = +3
Query: 153 EHFKFKITESNSSRVLVESLRRQLMDDNYDYQPSETEELLHPQDITRRQGVALNKQDTDL 332
EH K++ N+ + L R ++ YDY P + +L QD+T + + ++ ++ L
Sbjct: 787 EHVGSKVSMPNNG--VPSKLIRSIIGQTYDYLPQDY--VLTNQDVTAQDIILVSSENETL 842
Query: 333 DSINIFVPETINNQYIITEDKDTGQDML 416
++ F + + ++T+DK D++
Sbjct: 843 VNMGGFSVKKHHLSCLLTKDKWVNDDVI 870
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 366 NNQYIITEDKDTGQDMLHHLDDRPTDIMTSDQRDYVELHDDGTKPTQQAKYKILKVKNPS 545
N ++ +TE +M H +D P D S Q+D E ++ TK QA K K+ N S
Sbjct: 738 NKRFKLTEVNHDDPEMSH--EDAPEDEDISMQKDPPEGSEEFTKQVHQAFLKYTKLLNES 795
>10_08_0843 -
20960249-20960446,20960583-20960987,20961092-20961232,
20961324-20961471,20961742-20961863,20962372-20962412,
20962671-20962839
Length = 407
Score = 28.3 bits (60), Expect = 5.9
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Frame = +3
Query: 177 ESNSSRVLVESLRRQLMDDNY--DYQPSETEELLHPQDITRRQGV--ALNKQDTDLDSIN 344
E+ R L ESLRRQ D+ Q + E L+ +++ RR+ + AL K + +L +
Sbjct: 181 ENLMERALSESLRRQRADEQVVSSLQKVKQFEELYLEEVKRRKELEGALVKANLELTRLK 240
Query: 345 IFVPETINNQYIITEDKD---TGQDMLHH------LDDRPTDIMTSDQRDYVELHDDGTK 497
+ N+Q I D+ T + +L D T + Q++Y++LH D
Sbjct: 241 QEMDIPRNHQSTILGDRQEVITDKFILRQQTVDMKSDFGATGQLIKPQQEYLQLHPDHDN 300
Query: 498 PTQQ 509
+Q
Sbjct: 301 GVRQ 304
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 635 LREGSVVEADDGHSVFFFFLY 573
L +GSVVEAD + FFFF +
Sbjct: 291 LEDGSVVEADTVTTFFFFFFF 311
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 357 ETINNQYIITEDKDTGQDMLHHLDDRPTDIMTSDQRDYVELHD-DGTK 497
++I+ +++ + D L D P + SD YV+ HD DGTK
Sbjct: 290 DSIHGAHLLRKVVDNSTSFSTSLGDHPDCGIDSDSHGYVQNHDKDGTK 337
>03_01_0146 -
1161005-1161133,1161239-1161283,1161369-1161469,
1161585-1161691,1161823-1161924,1162028-1162250,
1162343-1162382
Length = 248
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/100 (21%), Positives = 41/100 (41%)
Frame = +3
Query: 228 DDNYDYQPSETEELLHPQDITRRQGVALNKQDTDLDSINIFVPETINNQYIITEDKDTGQ 407
DDN+ + + ++I Q + +QD +LD + + T + I E+ D
Sbjct: 129 DDNHAKIDVSSIANMDNREIIELQRNVIKEQDDELDKLEETIVSTKHIALAINEELDLHT 188
Query: 408 DMLHHLDDRPTDIMTSDQRDYVELHDDGTKPTQQAKYKIL 527
++ LD++ + QR +L T+ + A L
Sbjct: 189 RLIDDLDEKTEETSNQLQRAQKKLKSVTTRMRKSASCSCL 228
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +3
Query: 435 PTDIMTSDQRDYVELHDDGTKPTQQAKYKILKVKNPSRRSMGSRRFIQEEKEDGVAIISL 614
PTD TS+ D DD P +YK++ + S ++ +DG +I
Sbjct: 739 PTDSSTSNMED-----DDAHIPDGSGRYKLMAFVSHMGTSTHCGHYVAHVLKDGRWVIFN 793
Query: 615 DDGTFPEFRLPKD 653
D LPKD
Sbjct: 794 DSKVAASVDLPKD 806
>12_01_0508 + 4027113-4028522
Length = 469
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 294 VWLYPADAVVPPSLKAGSHSCRPSAVAGDSPLALEMSSIP 175
++L+ A+AV+PP+L+ G + R S VA D+ L + +P
Sbjct: 95 IYLHCAEAVMPPTLEHG-YFGRSSLVAADATHLLLLVVVP 133
>05_03_0004 - 7305986-7306052,7306174-7306490
Length = 127
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 156 HFKFKITESNSSRVLVESLRRQLMDDNYDYQPSETEELL 272
HFK I+ S ++ V L R L Y+P T+E++
Sbjct: 89 HFKISISSYVSRKIYVSRLLRFLFGPQNRYRPVSTKEIM 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,267
Number of Sequences: 37544
Number of extensions: 383903
Number of successful extensions: 1083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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