Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o24
         (670 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    28   0.31 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.2  
AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...    25   1.6  
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    25   2.2  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   6.6  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 27.9 bits (59), Expect = 0.31
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 383 HRGQGHRTGHASPPGRQTDGHHDQRPARL 469
           HR   +  G +SPP R       QRPAR+
Sbjct: 211 HRYVQYEVGESSPPTRDRAARRGQRPARV 239


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
 Frame = +3

Query: 177 ESNSSRVLV--ESLRRQLMDDNYDYQPSETEELLHPQD----ITRRQGVALNKQDTDLDS 338
           ++ SS+ L+  +S+ R+   D  D   SE  +    ++    I   +  AL +Q+  +D 
Sbjct: 393 DATSSKYLIHLDSVNREQKSDQ-DRLDSEINKKAQIEENYKKIESEKNEALKRQEKLIDH 451

Query: 339 IN---IFVPETINNQYIITEDKDTGQDMLHHLDDRPTDIMTSDQRDYVELHDDGTKPTQQ 509
           I    + + E    +  +++D  T ++ +H L     ++        ++ H+D  +  +Q
Sbjct: 452 IKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSELDNVREQLGDAKIDKHEDARRKKKQ 511

Query: 510 AKYKILKVKNP 542
              ++ K++ P
Sbjct: 512 EVVELFKLEVP 522


>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 HYHRGQGHRTGHASPPGRQTDGHHDQRPARLRG 475
           H H G+       +PPGR+      +R  R+RG
Sbjct: 216 HQHIGKASTVKRGTPPGRKVGLIAARRTGRIRG 248


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 297 QGVALNKQDTDLDSINIFVPE-TINNQYIITEDKDTGQDMLHHLD 428
           +G+++  Q+ + +  + +VP+ +   Q II  D +T ++ML HLD
Sbjct: 67  RGISIKLQEEERERRDNYVPDVSALEQDIIEVDPET-KEMLKHLD 110


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 419  PPGRQTDGHHDQRPARLRG 475
            P GR TD H  Q+P  L G
Sbjct: 1268 PQGRSTDYHATQQPLPLPG 1286


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,702
Number of Sequences: 2352
Number of extensions: 15300
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)