Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o24
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    31   0.008
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    31   0.008
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 141 VVAREHFKFKITESNSSRVLVESLRRQLMDDNYDYQPSETEELLHPQDITRRQGVALNKQ 320
           V+ R  +KF+    +S RVL+ ++R +     Y Y PS  E+        R    A +K+
Sbjct: 358 VMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKE 417

Query: 321 DTDLDSI 341
           D    S+
Sbjct: 418 DLSPSSL 424


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 141 VVAREHFKFKITESNSSRVLVESLRRQLMDDNYDYQPSETEELLHPQDITRRQGVALNKQ 320
           V+ R  +KF+    +S RVL+ ++R +     Y Y PS  E+        R    A +K+
Sbjct: 358 VMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKE 417

Query: 321 DTDLDSI 341
           D    S+
Sbjct: 418 DLSPSSL 424


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 598 TPSSFSSCMNRLEPILRRLGFFTFNILY 515
           TP   +  ++R   I+  + F  FNILY
Sbjct: 436 TPQEIAQWIDRRSRIVFPVAFIIFNILY 463


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 371 PIHYHRGQGHRTGHASPPGRQTDGHHDQRPARLRGTP 481
           P H+  G GH   HA+P    +   H   P     TP
Sbjct: 414 PHHHTMGHGHSHIHATPHHHHS---HAATPHHQHSTP 447


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 102 NNGNKFCSKHETHRAEPHTQS*AEQTELTVCV 7
           +NG  + +  E HRA  H+ S   ++ L  C+
Sbjct: 120 SNGKIYANHCELHRAACHSGSSLTKSRLMRCL 151


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +3

Query: 309 LNKQDTDLDSINIFVPETINNQYIITEDKDTGQDMLHHLDDRP 437
           L   D   D +    P      +  TE  + G  +LH+  DRP
Sbjct: 98  LQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYYSDRP 140


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +3

Query: 309 LNKQDTDLDSINIFVPETINNQYIITEDKDTGQDMLHHLDDRP 437
           L   D   D +    P      +  TE  + G  +LH+  DRP
Sbjct: 98  LQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYYSDRP 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,257
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)