Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o23
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    91   1e-19
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    86   5e-18
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   3.4  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
 Frame = +1

Query: 211 IIHTPLCEAK-LSKHMDYNIYLKCENLQYTGSCAERGMRNALVAYGEKIMDRGIIVPSQG 387
           I  TPL +   +S+     +YLK E+L    S   RG  N + +  ++ +  G+I  S G
Sbjct: 111 IKETPLTKGVVISESTGVPVYLKREDLTPVFSFKIRGAHNKMASLDKQSLKNGVIACSAG 170

Query: 388 NMALGAAYHASFFGIPVTVVLPDRTSPALAHRCTELGADVVLYGTSYDDALAYAKKVQRE 567
           N A G AY A   G+  T+V+P  T          LGA+V+L+G ++D A A   ++ +E
Sbjct: 171 NHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVLLHGANFDIAKAECARLAKE 230

Query: 568 SR-QILLSADDPLVMAGLGTVGIEIITQ--LPETDAVIVPV 681
              +++   DDP V+AG GT+G+EI+ Q  L + DA+   V
Sbjct: 231 QNLEVIHPFDDPYVIAGQGTIGLEILHQIDLRKLDAIYCAV 271


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 2/172 (1%)
 Frame = +1

Query: 166 SFNEIKQAVERIESGIIHTP-LCEAKLSKHMDYNIYLKCENLQYTGSCAERGMRNALVAY 342
           +++++  A ERI+     TP L  + ++K     ++ KCEN Q  G+   RG  NAL   
Sbjct: 9   TYDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQL 68

Query: 343 GEKIMDRGIIVPSQGNMALGAAYHASFFGIPVTVVLPDRTSPALAHRCTELGADVVLYGT 522
            E     G++  S GN A   A  A   GIP  +++P     A        G  V++Y  
Sbjct: 69  NEAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR 128

Query: 523 SYDDALAYAKKV-QRESRQILLSADDPLVMAGLGTVGIEIITQLPETDAVIV 675
             DD    AK++ +RE   I+   D P V+AG GT   E+  ++   DA+ V
Sbjct: 129 YKDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFV 180


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 157 HVLSFNEIKQAVERIESGIIHTPLCEAKLSKHMDYNI-YLKCEN 285
           H LS     ++    E G ++  LC A     MDY +  ++CEN
Sbjct: 130 HYLSITAFIESRSHFEYGFVNHALCAALRKFVMDYVVLIMQCEN 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,111
Number of Sequences: 5004
Number of extensions: 64706
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)