Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o23
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 99 2e-21
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981... 86 2e-17
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 35 0.070
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 29 3.5
12_02_1131 - 26358339-26360609 29 4.6
06_03_0491 - 21383036-21383161,21383246-21383439,21383627-213837... 29 4.6
02_05_0382 + 28491318-28491374,28492031-28492114,28492249-284922... 29 4.6
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 99 bits (238), Expect = 2e-21
Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Frame = +1
Query: 214 IHTPLCEA-KLSKHMDYNIYLKCENLQYTGSCAERGMRNALVAYGEKIMDRGIIVPSQGN 390
I +PL A KLS+ + N+++K E+LQ S RG N + + ++RG+I S GN
Sbjct: 114 IESPLQLATKLSERLGVNLWIKREDLQPVFSFKLRGAYNMMAKLSREQLERGVICSSAGN 173
Query: 391 MALGAAYHASFFGIPVTVVLPDRTSPALAHRCTE-LGADVVLYGTSYDDALAYAK-KVQR 564
A G A A G +V+P T+P + R E LGA VVL G SYD+A +YAK + ++
Sbjct: 174 HAQGVALSAQRLGCDAVIVMPV-TTPEIKWRSVERLGATVVLKGDSYDEAQSYAKQRCEQ 232
Query: 565 ESRQILLSADDPLVMAGLGTVGIEIITQLP-ETDAVIVPV 681
E R + D P V++G GT+G+EI+ QL A+ VPV
Sbjct: 233 EGRTFIPPFDHPDVISGQGTIGMEIVRQLQGPLHAIFVPV 272
>04_04_0753 -
27797298-27797547,27797765-27797951,27798040-27798113,
27798719-27798949,27799047-27799133,27799244-27799434
Length = 339
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Frame = +1
Query: 157 HVLSFNEIKQAVERIESGIIHTP-LCEAKLSKHMDYNIYLKCENLQYTGSCAERGMRNAL 333
+ + I++A RI + TP L + + ++ KCE Q G+ RG N++
Sbjct: 17 YAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSI 76
Query: 334 VAYGEKIMDRGIIVPSQGNMALGAAYHASFFGIPVTVVLPDRTSPALAHRCTELGADVVL 513
A + +G++ S GN A A A GIP +V+P G ++
Sbjct: 77 FALDDDEASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYGGHIIW 136
Query: 514 YGTSYDDALAYAKKVQRESRQILLSA-DDPLVMAGLGTVGIEIITQLPETDAVIVPVA 684
S + + AK+VQ E+ IL+ ++ ++G GTV +E++ ++PE D +IVP++
Sbjct: 137 SDVSIESRESVAKRVQEETGAILVHPFNNKNTISGQGTVSLELLEEVPEIDTIIVPIS 194
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 367 IIVPSQGNMALGAAYHASFFGIPVTVVLPDRTSPALAHRCTELGADVVL 513
++ P+ GN+ +G AY+A G V+P S T LGA+V+L
Sbjct: 89 LVEPTSGNLGIGVAYNALLKGYRFVAVMPAEYSLDKQMLLTYLGAEVIL 137
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 460 TSPALAHRCTELGADVVLYGTSYDD 534
T A A R +E+ ADVVL GT+ DD
Sbjct: 420 TDTAAALRASEINADVVLKGTAGDD 444
>12_02_1131 - 26358339-26360609
Length = 756
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 429 AEETCMVS-SAQCHVSL*WYYYSSV 358
A ET M S +A CHVSL YYY S+
Sbjct: 439 ARETAMASFAAGCHVSLGSYYYYSL 463
>06_03_0491 -
21383036-21383161,21383246-21383439,21383627-21383785,
21383904-21384029,21384290-21384492,21384691-21384818,
21385691-21385783
Length = 342
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 367 IIVPSQGNMALGAAYHASFFGIPVTVVLPDRTSPALAHRCTELGADVVL 513
+I P+ GN+ +G A G V+P R SP LGA+++L
Sbjct: 92 LIEPTSGNLGIGLVLVAIQKGYRFIAVMPARYSPDKQMLLRFLGAELIL 140
>02_05_0382 +
28491318-28491374,28492031-28492114,28492249-28492272,
28492398-28492472,28493083-28493157,28493198-28493290,
28493332-28493409,28493690-28493767,28494084-28494147,
28494474-28494655,28494729-28495064,28495148-28495267,
28495434-28495923,28496240-28496502
Length = 672
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 100 KSCK*SFKMVDDRIDCERPHVLSFNEIKQAVERIESGIIHTPL--------CEAKLSKHM 255
K CK M+D D H+ F + ++VE+I+ +++ PL C+ ++K +
Sbjct: 327 KVCKNKQLMLDRSPDVVAIHLKRFTSLDRSVEKIDKHVVY-PLELDLKPFHCDPDINKEL 385
Query: 256 DYNIY 270
Y++Y
Sbjct: 386 KYDLY 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,838,802
Number of Sequences: 37544
Number of extensions: 410869
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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