Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o23
(687 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 40 2e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 4.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 8.3
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 40.3 bits (90), Expect = 2e-05
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Frame = +1
Query: 265 IYLKCENLQYTGSCAER-GMRNALVAYGEKIMDRG--IIVPSQGNMALGAAYHASFFGIP 435
IY KCE L GS +R R A + ++ G II P+ GN +G A A+ G
Sbjct: 64 IYAKCEFLNPGGSVKDRIAYRMIQDAEDKGLLKPGCTIIEPTSGNTGIGLAMAAAVRGYK 123
Query: 436 VTVVLPDRTSPALAHRCTELGADVVLYGT-----SYDDALAYAKKVQRE 567
+V+P++ S LGA ++ T S + ++ A+K+Q+E
Sbjct: 124 CIIVMPEKMSDEKISTLYALGAKIIRTPTEASWHSPEAHISVAQKLQKE 172
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 226 AECVLSHFQFFRLLV*FH*KTAHGDVHSQFY 134
A LSH ++ LLV FH + G+ Q Y
Sbjct: 191 ASTTLSHAEYSMLLVYFHLQRHMGNFLIQVY 221
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 361 PPSGYIRSAFGTPISTGRPATV 382
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 361 PPSGYIRSAFGTPISTGRPATV 382
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 361 PPSGYIRSAFGTPISTGRPATV 382
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 361 PPSGYIRSAFGTPISTGRPATV 382
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 361 PPSGYIRSAFGTPISTGRPATV 382
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 361 PPSGYIRSAFGTPISTGRPATV 382
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 429 PPSGYIRSAFGTPISTGRPATV 450
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 519 PVQNNIRS*FGTTMSQGRRGAI 454
P IRS FGT +S GR +
Sbjct: 429 PPSGYIRSAFGTPISTGRPATV 450
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 8.3
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = +1
Query: 322 RNALVAYGEKIMDRGIIVPSQ-----GNMALGAAYHASFF 426
R +++ EKI + IVP + GN+ + Y FF
Sbjct: 848 RETIISAAEKIAEELKIVPEELVPLEGNLMINNKYALKFF 887
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,122
Number of Sequences: 438
Number of extensions: 4938
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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