Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o20
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D +   + GSW+
Sbjct: 138 YVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWT 170


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 101 YVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWT 133


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 101 YVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWT 133


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 101 YVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWT 133


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 101 YVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWT 133


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 101 YVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWT 133


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 169 YVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWT 201


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 20  YVTEGLSKSIQN*DALNFVFSDLK*RCQHGSWS 118
           YV  G+ KS    D   F F D     + GSW+
Sbjct: 169 YVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWT 201


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 245 RVGITRRR*DCDNDCGSRCCNL 310
           RVGI   +   +N+ GS  C+L
Sbjct: 114 RVGIVENQYAVENNTGSSLCDL 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,936
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)