Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o17
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   3.4  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 196 PFTRAARRYVKFGNISTRVSS---MTTISVKCNSDVC 297
           PF   AR+Y++F   S R  S   +  +   C++D+C
Sbjct: 48  PFNFHARKYLRFARFSRRGCSKCCLLRVQANCSADLC 84


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 196 PFTRAARRYVKFGNISTRVSS---MTTISVKCNSDVC 297
           PF   AR+Y++F   S R  S   +  +   C++D+C
Sbjct: 48  PFNFHARKYLRFARFSRRGCSKCCLLRVQANCSADLC 84


>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 51  SYQFYRNAEVKTLILLNISLCFD 119
           SY  Y +  +KT+++ N++LC D
Sbjct: 158 SYPLYYSQNLKTMVIENVTLCGD 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,009,293
Number of Sequences: 27780
Number of extensions: 64566
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)