Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o16
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 109 5e-25
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 41 2e-04
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S... 28 1.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 6.4
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 25 8.4
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 8.4
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 8.4
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 8.4
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 8.4
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 25 8.4
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 8.4
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 109 bits (261), Expect = 5e-25
Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Frame = +2
Query: 338 ENAFKRKWIKSEAKK--QGVDENIAKYDGKWEIQQPIRK-ILKNDFGLVLTTEAKHAAIS 508
+ A+ +WI S AK+ G++E Y G+W +++ LK + GLV+ EA H AIS
Sbjct: 47 QGAWSERWIPSHAKRFVNGIEE--MSYVGEWTVEESSGPGALKGEAGLVMKDEAAHHAIS 104
Query: 509 TLLDKPFEFKNKPLIVQYEVTMQEGQNCGGAYIKLLSKGTNTKADLRKFHDQTPYTIMFG 688
D+P K L+VQYEV +EG NCGGAY+KLL++ T+ + + Y IMFG
Sbjct: 105 YEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLLAEPTH-----GEMSNSIDYRIMFG 159
Query: 689 PDKCGNDNKLHFIFR 733
PDKCG ++++HFIF+
Sbjct: 160 PDKCGVNDRVHFIFK 174
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +2
Query: 416 GKWEIQQPIRKILKNDFGLV-LTTEAKHAAISTLLDKPF-EFKNKPLIVQYEVTMQEGQN 589
G W++ + L++++GL+ L + H IS L + + + P+++ ++V +
Sbjct: 58 GVWDLVEAPGSHLRDEYGLITLKSNKPHILISNLENPTTRQSSSVPIVLSFQVKPTKPWT 117
Query: 590 CGGAYIKLLSKGTNTKADLRKFHDQTPYTIMFGPDKCG 703
CG AY+ L+ + +N K + P I FG KCG
Sbjct: 118 CGHAYVSLVHQ-SNPK----NVSKEPPSVIRFGVKKCG 150
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +2
Query: 200 FGNTRLTNANEVDQNDEATVEIEEDDQYVSPELNSDNVYLSEHFDDENAFKRKWIKSEAK 379
+ T + E + E V + D EL+ D +Y+ D+N +K +++A
Sbjct: 162 YNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYK-NLCQNKAS 220
Query: 380 KQGV 391
+QG+
Sbjct: 221 EQGI 224
>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 207
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 269 EDDQYVSPELNSDNVYLSEHFDDENAFKRKWIKSE 373
E DQ V E S++ L E +DE K+ W + +
Sbjct: 165 EFDQLVQKEKESEHARLKEDHEDEKTVKKDWKRGD 199
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 227 NEVDQNDEATVEIEEDDQYVSPELNSDNVYLSEHFDDENAFKRKWI 364
NE ++ + E EE Q + ++ LS FD +FK W+
Sbjct: 503 NEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEFDIRQSFKENWV 548
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 8.4
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Frame = +2
Query: 278 QYVSPEL-NSDNVYLSEHFDDENAFKRKWIKSEAKKQGVDENIAKYDGKW-EIQQPIRKI 451
QYV L N V LS+ FD K +SE+ + V +I ++DG++ + RK
Sbjct: 42 QYVMSMLFNPMPVALSD-FDLWIKLSSKVYQSESFNKLVRMHIFQFDGQYITLNSEFRKQ 100
Query: 452 L---------KNDFGLVLTTEAKHAAISTLLDKPFEFKNKPLIVQYEVTMQEGQNCGGAY 604
N FG+ T E KH LD + + I+ + V E + G
Sbjct: 101 FITALTGGGNHNSFGVPCTDEDKHLVTVDFLD-AYAKETWETILHFMVGTPEAKFPGEGV 159
Query: 605 IKLLSKG 625
+ LL +G
Sbjct: 160 LSLLKRG 166
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 584 QNCGGAYIKLLSKGTNTKADLRKFHDQTPYTIMFGPDKCGN 706
+NC L+ N +++ Y I +G D+CGN
Sbjct: 449 KNCAFVNFTSLASAINAIDRIKQKKGYENYRISYGKDRCGN 489
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 533 FKNKPLIVQYEVTMQEGQNCGGAYIKLLSK 622
F + ++++Y T + GAY+K +SK
Sbjct: 177 FNHYDIVIEYHTTSSDQHRVVGAYVKPVSK 206
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 314 YLSEHFDDENAFKRKWIKSEAKKQGVDENIAKYDGKW 424
Y SE +DD+NA++R+ + + ++ +D+ A YD +
Sbjct: 24 YDSEVYDDQNAYQRQPADAYSNEEFLDQ--ADYDSMY 58
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 296 LNSDNVYLS-EHFDDENAFKRKWIKSEAKKQGVDENIAKYDGKWEIQQPIRKILKNDF 466
++ + V+L + FD++N + ++ + DE ++ Y+ I +RK L+ +F
Sbjct: 52 ISQNEVFLQPKFFDNQNFDAQSYLNDVLQDLSEDEFVSLYNKLLRIHMGVRKNLEKNF 109
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 158 ISRKLFLFSILLAFFGNT 211
+ K+FLF+ILLAF NT
Sbjct: 82 VKLKIFLFTILLAFETNT 99
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 8.4
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = +2
Query: 83 HISDSNRLINKRVFVLYQAQTKMAEISRKLFLFSI-LLAFFGNTRLT---NANEVDQNDE 250
H +R ++K V VL ++ E + LF S +GN L+ + D N
Sbjct: 209 HFEQYSRFLDK-VHVLKGETIRVEEDRKGLFNLSKGAQQSYGNQMLSVNLRPQDFDMNSV 267
Query: 251 ATVE----IEEDDQYVSPELNSDNVYLSEHFDDENAFKRKWIKSEAKKQ 385
T IE QY+ S + L+EH E AF ++ +Q
Sbjct: 268 LTASTMHHIESSPQYIERVYCSWELVLTEHVSSEYAFLLEYFNLSKDQQ 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,798
Number of Sequences: 5004
Number of extensions: 58018
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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