Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o14
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.66 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    29   0.88 
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   1.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   2.0  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.0  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   2.7  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   3.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.5  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   4.7  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   6.2  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             26   6.2  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    26   6.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.2  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.2  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   8.2  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 355 QSHIAESSLENEFSTNEMFNKNEIKENSSLNDNQEILILSEASMSLSGVFSSPTIS-QAS 531
           QS IA+  L  +  +  M  K  +KE   L    + +I    S   +G  +SP I  Q +
Sbjct: 669 QSLIADQQLSTQIGSVGMGKKQAVKELRKLQAKIDSIIADSMSPMGTGAVNSPAIKPQVT 728

Query: 532 QKSPTQA 552
              PT A
Sbjct: 729 PAPPTPA 735


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +1

Query: 421 EIKENSSLNDNQEILILSEASMSLSGVFSSPTISQASQKSPTQAADSLLRSE 576
           E+K +SS+ +++ + ++S+ + +L   F+S    Q  QKS +  A +L ++E
Sbjct: 249 ELKLHSSIMNDKYVCLVSKHNNALEDKFNSEAARQLLQKSLSIVASNLKQAE 300


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +3

Query: 102 IDKDISLRNSYLLESQSLEEDTDLKTKYKTFLWFLNYGKIFVTRLTKDLIISLASYVYSG 281
           ++ ++ LRN   +E+Q +        KY TFL F+ +   F TRL+  + +  + + Y  
Sbjct: 329 VNVEVPLRNIPSIETQKV-----FWPKYNTFLRFMEFKGKFYTRLSGAVYLEESDFYYIA 383

Query: 282 QLL 290
           +++
Sbjct: 384 KVI 386


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 418 NEIKENSSLNDNQEILILSEASMSLSGVFSSPTISQASQ----KSPTQAADSLLRSELDM 585
           N    NS +N N  ++  +  S +L      P + Q SQ    K P+   DS+ +S  +M
Sbjct: 476 NPNANNSFVNLN--LIQFTSPSQALFDYGEGPYVDQKSQYLQPKQPSSNTDSIDQSSYNM 533

Query: 586 KLRIALEFLHRDNE 627
            L  + +FL  D +
Sbjct: 534 SLAASKQFLTSDTQ 547


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 547 QAADSLLRSELDMKLRIALEFLHRDNEFLIAAELGDDILLDKYI 678
           Q  D  +R ++DM  R+ +EFL   N+ L      DD   D YI
Sbjct: 676 QICDMHIRKDMDM--RVYVEFLSEHNQLLADFGATDDNDFDTYI 717


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 451 NQEILILSEASMSLS----GVFSSPTISQASQKSPTQAADSLLRSE 576
           NQ + +LS  S S+S    G  +SP+ SQA+  +   +  S+L+S+
Sbjct: 357 NQSLSMLSSLSNSMSSTSNGALNSPSYSQAAIPNTNSSLTSILQSD 402


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 228 TRLTKDLIISLASYVYSGQLLPKHITDLMHTQKILQAERELL 353
           T L   +++S  +Y     LLP   T  +HT+ I+Q  R +L
Sbjct: 112 TSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIRYML 153


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 346 NY*QSHIAESSLENEFSTNEMFNKNEIKENSSLNDNQEILILSEASM---SLSGVFSSPT 516
           N+  +H   + ++N  + N+  +  E +  +S + +    I S +SM     S  FSSP 
Sbjct: 49  NHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPL 108

Query: 517 ISQASQKSPTQAADSL 564
            S   + SP +  DSL
Sbjct: 109 SSSLHRSSPKRPHDSL 124


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/88 (26%), Positives = 37/88 (42%)
 Frame = +1

Query: 316 TLKKYYKLNVNY*QSHIAESSLENEFSTNEMFNKNEIKENSSLNDNQEILILSEASMSLS 495
           TL K    + NY  S  + SSL +  + +     +    +SS N        S +  S S
Sbjct: 54  TLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSS 113

Query: 496 GVFSSPTISQASQKSPTQAADSLLRSEL 579
              SS  ++ +S  S + A+ S+  S L
Sbjct: 114 ATSSS--LASSSTTSSSLASSSITSSSL 139


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +1

Query: 364 IAESSLENEFSTNEMFNKNEIKENSSLNDNQEILILSEASMSLSGVFSSPTISQASQKSP 543
           I   +LE +F+TN     NE+   S L+ +  +     + ++L    SS ++  +S+K  
Sbjct: 239 IPTQTLEPKFTTNTAKYANELVSCSMLDSSSTLSKSVNSKINLKSHQSSSSVQNSSRKL- 297

Query: 544 TQAADSLLRSELDMKLR 594
           T +  +L +S L  ++R
Sbjct: 298 TSSQLTLRQSSLFDRVR 314


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 60  SLNVSNNMNDSQKFIDKDISLRNSYLLESQSLEEDTD 170
           S+ V+ N NDS +    ++  RN+   +SQSL+  T+
Sbjct: 42  SIGVTENGNDSPEAFKNELDNRNN--ADSQSLQSSTE 76


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 466 ILSEASMSLSGVFSSPTISQASQKSPTQAADSLLRSELDMKLRI 597
           + S A++S +    +PT+++A+   P     S+   ELD +L I
Sbjct: 364 LASRANISDNSTGLTPTLAKATLAQPVSTVVSVASFELDPRLNI 407


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 ENEFSTNEMFNKNEIKENSSLNDNQEILILSEAS 483
           ENE +     NKNE    +SL  N+EI+   E S
Sbjct: 133 ENEETKETTTNKNESLPGTSLKRNREIIEKEERS 166


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 84  SYYYLHLNLRCKINTKLHKSIEE 16
           ++YY+ L L C +   LH++I E
Sbjct: 335 AWYYMKLGLNCCLRLGLHRNITE 357


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -3

Query: 691 FRLALYIYPVI-YHHQALQRLKTH-YLYVGILELFLISYPIHCVIRNLLLVLET-FATL 524
           F  A+Y+ P++ +H  AL  +  + +L +GI ++F+  + +  +   ++  L T FA L
Sbjct: 181 FFAAMYLVPILGFHDWALSLVSAYLFLSIGIGQMFIHLFALQHIFAFIIAGLMTLFAAL 239


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 611 RNSRAILNFISNSLRNKESAACVGDFCDACEMVGDEKTPDKLIEASDKIKIS*LSLREEF 432
           R + ++ N +   +R ++      +F D      ++K+P+K  EAS+KI      L  E 
Sbjct: 79  RGNSSLQNLVPLIIRLRDHIDDFLEFIDYEASGSEKKSPEKADEASEKIFRRCEVLLREI 138

Query: 431 SFISFLLNISL 399
                L+N+SL
Sbjct: 139 EETIPLINLSL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,844
Number of Sequences: 5004
Number of extensions: 53465
Number of successful extensions: 213
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)