Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o13
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.17
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 31 0.17
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 31 0.17
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 29 0.68
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 29 0.89
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 29 0.89
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 28 1.6
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 27 2.1
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 3.6
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 6.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 8.3
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 8.3
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 263 GLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTD 442
G+ + IK E E L +E+GV K + HY+ TRIQ K Q +N+ S +
Sbjct: 711 GMANNAIK-NDEQELQMLKDLGNLESGV-KDRAHYLTTRIQ--KNQGVITDNEKSIERLT 766
Query: 443 VSIKNLE 463
++K ++
Sbjct: 767 EALKKID 773
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 284 KLYQENECGKLNQQ--NKVETGVLKQKLHYIYTRIQNLKEQV----KQQNNQPSTSKTDV 445
+LY E +Q NK +L+++ I +++ E KQ +TSK V
Sbjct: 411 ELYHETVVDMPTKQVSNKERLEILREQEELIEEEAEHVAEHPDLAKKQTEENKATSKPAV 470
Query: 446 SIKNLERNIPKN 481
S K+ E NIPKN
Sbjct: 471 SAKSPESNIPKN 482
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 31.1 bits (67), Expect = 0.17
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Frame = +2
Query: 197 SSIEEFSRAEEEVRHLELLKKA----GLTTDEIKLYQENECGKLNQQNK-VETGVLKQKL 361
S + + R+E E+R L LL + G T + ++ E KL+ + K +
Sbjct: 714 SHVTQIQRSEVELRELYLLINSDSFQGSTNSKERII-EYLLDKLDLRKKEIAAESTLWSN 772
Query: 362 HYIYTRIQNLKEQVKQQNNQPSTSKTDVSI--KNLERNIPKNTY 487
I ++++L+EQ+ +Q++QPST T + I K R P++ +
Sbjct: 773 DGIDDKLRDLREQMSRQSSQPSTVSTILQIPDKKFHRPFPRHLH 816
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 252 SNSKCRTSSSARLNSSIEDNPYLVKGNTSDFFSN 151
SNS +T SS R NSS ++P+ ++ D F N
Sbjct: 174 SNSLLQTESSLRPNSSFVNSPFFPLPSSDDLFLN 207
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 28.7 bits (61), Expect = 0.89
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 251 LKKAGLTTDEIK--LYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP 424
L K GL DE L ++N N ++ V++ LKQ L +I LK++ + P
Sbjct: 513 LVKPGLGVDEALAVLAKQNNLTDTNLKDAVDS--LKQSLSFINLDASALKDREPSEKELP 570
Query: 425 STSK 436
ST+K
Sbjct: 571 STAK 574
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 380 IQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYC-DGHP 502
IQN+ E+VK+ P + KT+ S K L + T C D +P
Sbjct: 23 IQNINEEVKRDIQNPLSYKTETSDKELCQTAACATSCSDWYP 64
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 347 LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVS--IKNLERNIPK 478
L + Y Y LK+++K++N+Q S+ D S ++ LE+ + K
Sbjct: 11 LMYEYKYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDK 56
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 188 YGLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQEN 301
YG + IEEF A E+ ++ + + DEI+ QE+
Sbjct: 331 YGKTMIEEFEEANEDFLEQKVNDGSAIKADEIRKPQES 368
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 638 LCYSEIKFFLFYVLNVVIVFFFCSKVKCRP 549
L YSE F+LF V N+ I F F S + P
Sbjct: 156 LSYSENPFYLFEVKNLSISFHFESPQQVEP 185
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 347 LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 493
+ Q+LHY T +L +Q Q+ + + KN+ +N KN + +
Sbjct: 412 ISQELHYFKTVGWSLVDQWDQKLEEKEDATECFFYKNVSQNTAKNNFLE 460
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.3
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +2
Query: 194 LSSIEEFSR-AEEEVRHLEL-LKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHY 367
+ S+EE ++E+ L L+ L T+++K N+ LNQ+ +++ VLK+K
Sbjct: 1364 IHSLEEGKEETKKEIAELSSRLEDNQLATNKLK----NQLDHLNQEIRLKEDVLKEKESL 1419
Query: 368 IYTRIQNLKEQVKQQNN 418
I + ++L Q +++++
Sbjct: 1420 IISLEESLSNQRQKESS 1436
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.3
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 209 EFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQN 388
E R E+E + ELL+K + + +L E E K K + K+K RI+
Sbjct: 104 EKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEK----KEK-----ERIRL 154
Query: 389 LKEQVKQQNNQPSTSKTDVSIKNLE 463
++EQ ++N Q + + K E
Sbjct: 155 IEEQKHKENEQRRLKQEQIDAKRKE 179
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 311 KLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP 424
KL++ K + +L QKL+ I R L+ +++ QP
Sbjct: 703 KLSENRKEQCKILTQKLYTIVFRCNELQSVLRECVTQP 740
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,452
Number of Sequences: 5004
Number of extensions: 46122
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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