Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o13
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929... 34 0.100
01_05_0707 - 24468329-24468448,24468794-24468940,24469050-244691... 31 0.70
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 5.0
05_01_0450 + 3577928-3579526,3579695-3579832 28 6.6
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 28 6.6
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128... 28 6.6
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 28 6.6
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 28 8.7
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 8.7
>10_05_0114 +
9294747-9294788,9294883-9294996,9295066-9295173,
9295774-9296145,9296584-9296652,9296754-9296825,
9297070-9297198,9297690-9297770,9298622-9298807,
9299135-9299860
Length = 632
Score = 34.3 bits (75), Expect = 0.100
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 528 FSKVFISFIGCPS-QYVFLGMFLSKFFIDTSVLDVEG*LFCCFTCSLRFCILV*I*CNFC 352
F F+ F+G QYV +G++ ID +L V G FC + FC+LV I C C
Sbjct: 28 FYVFFVPFVGRSELQYVLMGLYTP--LIDLHLLSVWGDFFC----TTPFCVLVGIICGEC 81
Query: 351 FNTPVSTLFC 322
+ + C
Sbjct: 82 LGEILHYITC 91
>01_05_0707 -
24468329-24468448,24468794-24468940,24469050-24469103,
24469185-24469300,24470537-24470583,24470686-24470723,
24471050-24471268,24471504-24471602,24471675-24471728,
24472907-24473148,24474258-24474447
Length = 441
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 264 PAFFSNSKCRTSSSARLNSSIEDNPYLVKGNTSDFFSNS 148
P F KC+ S + N E L GNT+DF++ +
Sbjct: 162 PFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDFYAKT 200
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 308 GKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVS 448
GK N ++++E V +K + ++ KE+ K+ QP K + S
Sbjct: 28 GKRNAEDEIEKAVSAKKQKTVREKVVPSKEEAKKVKKQPPPKKVESS 74
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 221 AEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVE--TGVLKQKLHYI 370
AEE +R L+ L++DE L+Q+ K +NK + +LKQKL +
Sbjct: 507 AEELMRLLDANSDGSLSSDEFALFQKRVKLKTKLENKDDEYKEILKQKLQKV 558
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/74 (21%), Positives = 29/74 (39%)
Frame = +2
Query: 206 EEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQ 385
E + EV+ ++ + L + KL E E + + + K + T +Q
Sbjct: 186 EREQKIRSEVKEIQKVFFCSLCNKQYKLAHEFESHLSSYDHNHRKDYISDKFTVVTTEVQ 245
Query: 386 NLKEQVKQQNNQPS 427
+ KQQ QP+
Sbjct: 246 GNERNAKQQQQQPA 259
>02_02_0620 +
12210812-12210997,12212397-12212474,12212744-12212848,
12212998-12213022,12213214-12213266,12213523-12213635,
12213777-12213801,12214560-12214601,12214666-12214726,
12216027-12216043,12217143-12217257,12217431-12218659
Length = 682
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 320 QQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNL 460
Q + +E GV K LH+IYT + Q Q ++ S + V ++L
Sbjct: 534 QVDDMEPGVFKSLLHFIYTDSLDTMAQEDQSRDEASEEEDLVMAQHL 580
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 365 YIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNL 460
+I TRI NLK V +N PS + VSIK +
Sbjct: 240 HIQTRIYNLKSSVCLRNLNPSDIEKMVSIKGM 271
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 194 LSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIY 373
L+S E + +V++ E+ K DE EN LN++N ET LKQ + Y
Sbjct: 798 LNSESENIKQALDVKNSEV-DKLKHALDENNSEIENLKHTLNEKNS-ETDKLKQDIDATY 855
Query: 374 TRIQNLKEQVKQQNN 418
++NLK ++ + +
Sbjct: 856 MEMENLKYEIASRES 870
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 380 IQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 493
I +KE+ +++N S +VS KN ++ +NT D
Sbjct: 2042 ITEIKEETEEENGPNSGGTLEVSAKNYNEDVHENTEKD 2079
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,253
Number of Sequences: 37544
Number of extensions: 223116
Number of successful extensions: 602
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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