Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o13
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75530-4|CAA99794.2| 357|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical pr... 33 0.27
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 31 0.63
AF016688-4|AAB66075.2| 481|Caenorhabditis elegans Hypothetical ... 30 1.5
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical ... 29 3.4
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 29 3.4
Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-li... 29 4.5
AC024766-1|AAF59490.2| 160|Caenorhabditis elegans Hypothetical ... 28 5.9
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 28 7.8
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 28 7.8
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 28 7.8
>Z75530-4|CAA99794.2| 357|Caenorhabditis elegans Hypothetical
protein C47E8.6 protein.
Length = 357
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 137 TLPKEFEK-KSEVLPFTKYGLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGK 313
T E EK K E KY + +E+ + E+E + + ++ + +EI L +
Sbjct: 209 TFIAELEKEKLEAQSDLKYAIVHLEQRMKEEQETQMQAMKEEREIEIEEIGLKHMEQIRT 268
Query: 314 LNQQNKVETGVLKQKLHYIYTRIQNLKE 397
+ N +T +++ K+ ++ + + NL++
Sbjct: 269 IESGNSEQTAMMQGKIDFLQSEVSNLRD 296
>Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical
protein F43C1.7 protein.
Length = 109
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +2
Query: 239 HLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNN 418
H+ L +G+T D I EC +L ++N ++ GV +K+ YT +NLK+ Q
Sbjct: 48 HVYLQLPSGITIDTIPEELLEECCQLVKKNSIQ-GVKMEKVEVNYTLKENLKKVKGMQTG 106
Query: 419 QPS 427
+ S
Sbjct: 107 EVS 109
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 134 NTLPKEFEKKSEVLPFTKYGLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENE 304
N LP+ +E++ F + G + I+ F+ A + L LLKK+GL +I L++ NE
Sbjct: 263 NALPQGAHPLAELVAFAEAGRAPID-FTVAPVDAVRL-LLKKSGLQVSDIALWELNE 317
>AF016688-4|AAB66075.2| 481|Caenorhabditis elegans Hypothetical
protein F18A12.3 protein.
Length = 481
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 245 ELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQ--QNN 418
ELL + D + ++ CG+ ++Q+ VE+ QK YI L++Q+++ NN
Sbjct: 69 ELLNYQDPSVDPCVDFFQHACGRFHEQSSVESRT--QKKRYI------LQKQIREFLHNN 120
Query: 419 QPSTSKTDVSIK 454
+ STSK++ +K
Sbjct: 121 KTSTSKSENLMK 132
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +2
Query: 146 KEFEKKSEVLPFTKYGLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKL-NQ 322
KE ++ S + F + + E + ++ H + ++AGL + K + ++ KL N+
Sbjct: 174 KESQEDSPTMQFLAETTNVVVEKALSKSTGLH-DASEEAGLRRTKKKKKKSSK--KLPNR 230
Query: 323 QNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDV 445
++ E+ ++ HYIY +NLK +++ ST + +
Sbjct: 231 KDLEESEDIESSTHYIYPESRNLKSNLQKLTTDISTEEKQI 271
>AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical
protein Y54G11A.2 protein.
Length = 210
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 185 KYGLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLH 364
KYG F + H+ L +G+T D I +C +L +QN +E G +
Sbjct: 30 KYGWPEDVWFHVDKLSSAHVYLRLHSGMTIDSIPEALLIDCCQLVKQNSIE-GCKLNNVA 88
Query: 365 YIYTRIQNLKE 397
+YT NLK+
Sbjct: 89 IVYTMWSNLKK 99
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 143 PKEFEKKSEVLPFTKYGLSSIEEFSRAEEEVR-HLELLKKA-GLTTDEIKLYQENECGKL 316
P F+ + L F + +++ + A+E+V HL LL G ++ ++ CGKL
Sbjct: 877 PARFDSATAALDFES--IIDLKDLASADEKVLYHLGLLADLFGWYPQSLECFEI--CGKL 932
Query: 317 NQQNKVETGVLKQKLHYIYTRIQNLKE 397
N +++E +K + Y + +K+
Sbjct: 933 NVTSEIELAKIKSSILYPDEHLNKIKK 959
>Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical
protein K09B11.1 protein.
Length = 485
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +2
Query: 191 GLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYI 370
G ++++ E+ L + G +T LYQ KL + ++ + +K HY+
Sbjct: 51 GCKRYSSYNQSPSELL-LRIWSSKGYSTTH--LYQLFAKTKLIRLMRMMRSQVHEKYHYL 107
Query: 371 YTRIQNLKEQVKQQNNQPSTSKTDVSIKNLE 463
++ N +V +Q QP S++ +K E
Sbjct: 108 ENKVTNSTSRVSKQMVQPPGSQSASRLKKTE 138
>AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-like
kinase 1 protein.
Length = 485
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +2
Query: 191 GLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYI 370
G ++++ E+ L + G +T LYQ KL + ++ + +K HY+
Sbjct: 51 GCKRYSSYNQSPSELL-LRIWSSKGYSTTH--LYQLFAKTKLIRLMRMMRSQVHEKYHYL 107
Query: 371 YTRIQNLKEQVKQQNNQPSTSKTDVSIKNLE 463
++ N +V +Q QP S++ +K E
Sbjct: 108 ENKVTNSTSRVSKQMVQPPGSQSASRLKKTE 138
>AC024766-1|AAF59490.2| 160|Caenorhabditis elegans Hypothetical
protein Y39G10AL.1 protein.
Length = 160
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 224 EEEVRHLELLKKAGLTTDEIKLYQEN-ECGKLNQQNKVETGVLKQK 358
+E++ L+ L +A + T+E KL+ EN E +L ++++ E ++QK
Sbjct: 49 QEQIAALQALLRASIATEE-KLHAENLELSELAKKHRKEAEEIRQK 93
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 368 IYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 493
+YT I ++ E ++ + N + +S KN + + ++YCD
Sbjct: 416 MYTAILSICENLEMRKNATKRKDSGLSFKNEQFTVMLDSYCD 457
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Frame = +2
Query: 302 ECGKLNQQNKVETGVLKQKLHYIYTRIQ---NLKEQVKQQNNQPST------SKTDVSIK 454
E G++ Q+ T + KL +Y + L+EQV+Q+N P D +K
Sbjct: 324 ELGRMCTQHNQNTERNQTKLGILYNAVSVITQLEEQVRQRNMNPKVMAGMKRKPDDDKMK 383
Query: 455 NLERNIPKNTYCDGHP 502
L+ N P + GHP
Sbjct: 384 MLDDNAPSAQF--GHP 397
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Frame = +2
Query: 302 ECGKLNQQNKVETGVLKQKLHYIYTRIQ---NLKEQVKQQNNQPST------SKTDVSIK 454
E G++ Q+ T + KL +Y + L+EQV+Q+N P D +K
Sbjct: 324 ELGRMCTQHNQNTERNQTKLGILYNAVSVITQLEEQVRQRNMNPKVMAGMKRKPDDDKMK 383
Query: 455 NLERNIPKNTYCDGHP 502
L+ N P + GHP
Sbjct: 384 MLDDNAPSAQF--GHP 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,276,299
Number of Sequences: 27780
Number of extensions: 245511
Number of successful extensions: 782
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -