Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o12
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    24   1.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  

>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 490 WTLRNL-SDAATKVEGLEALLQSLVQVLASTDVNIVTCAAGILSNLTCNNQRNKMTVCQV 666
           W+ R    +++++V    AL+ S    LASTD+  V      L +L   N    +T+ Q 
Sbjct: 5   WSARVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLEFWDL-DLNAQNHPRGLTIIQN 63

Query: 667 G 669
           G
Sbjct: 64  G 64


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 699 HHRADQRVHAAHLAYRHLIA 640
           HH A   +HA H    H +A
Sbjct: 323 HHHAGHHIHAQHHVVNHHVA 342


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 536 WRHCCKASCKF*LRLMSTS 592
           WR C KA+C+   R+  +S
Sbjct: 886 WRECDKATCEKLFRMKKSS 904


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 632 LQVKLERIPAAQVTMLTSVEARTCTRLCSNASRP 531
           ++ K E +PAA     ++     C R CS+A RP
Sbjct: 170 VKYKKEDLPAA-AGKASNGNKCCCLRTCSSAKRP 202


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 551 CSNASRPSTLVAASDRFLRVQRQF 480
           CS     + L  A D+F  +Q+QF
Sbjct: 535 CSRGDLQTYLRTAWDKFTNMQQQF 558


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
          protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 45 WWNSSISETTQL 80
          WW + +SET+ L
Sbjct: 24 WWENFVSETSYL 35


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 45  WWNSSISETTQL 80
           WW + +SET+ L
Sbjct: 257 WWENFVSETSYL 268


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 45  WWNSSISETTQL 80
           WW + +SET+ L
Sbjct: 257 WWENFVSETSYL 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,889
Number of Sequences: 336
Number of extensions: 3219
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)