Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o12
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 42 9e-05
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.28
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 29 0.87
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 28 1.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 2.0
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 26 4.6
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 6.1
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 25 8.1
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 8.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.1
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 25 8.1
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 41.9 bits (94), Expect = 9e-05
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +1
Query: 1 NLSHHRQGLLAIFKSGGIPALVKLLS-SPVEAVLFYAITTLHNLLLHQDGSKMAVRLAGG 177
N+S H I +G + LV LLS + E + +A++TL NL + +K A+ A
Sbjct: 318 NISIHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSERNKRAIIEANA 377
Query: 178 LQKMVALLQRNNVKFLAIVTDCLQILAYGNQ 270
+QK+ L+ V + +T CL +LA ++
Sbjct: 378 IQKLRCLILDAPVSVQSEMTACLAVLALSDE 408
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 547 LQSLVQVLASTDVNIVTCAAGILSNLTCNNQRNKMTVCQVGGVDALVRTVVS 702
++ ++ +L S D I A+ L NL N + NK V ++ G+D L+R ++S
Sbjct: 87 IEPVLFLLQSPDAEIQRAASVALGNLAVNAE-NKALVVKLNGLDLLIRQMMS 137
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.28
Identities = 40/154 (25%), Positives = 65/154 (42%)
Frame = +3
Query: 9 SPSSRSACHLQEWWNSSISETTQLSS*SCALLCYYNTA*PIVASRRFKDGCSSSWRSTKN 188
SP+S S+ + +SS S ++ LSS S + ++++ P +S SSS S+ +
Sbjct: 299 SPTSTSST-ISSSSSSSSSFSSTLSSSSMSSSSSFSSS-PTSSSSTISS--SSSSPSSSS 354
Query: 189 GGITTKEQCQVPSYCD*LPSDFGLWESRIEIDYSSISGPNRISSHYAFLRLRKVAVDNFE 368
TT S+ + S S + SS S P SSH + L K + +
Sbjct: 355 FSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414
Query: 369 SS*GIIGMLKQQASYSGSWWHASSGHASRQPERP 470
SS + ++ S S H+SS S +P
Sbjct: 415 SSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKP 448
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 601 AAGILSNLTCNNQRNKMTVCQVGGVDALVRTV 696
A IL+ + N++ K+ VC + G+D L+R +
Sbjct: 265 AVEILAIILANSKEAKLKVCNLNGIDLLLRRI 296
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +1
Query: 1 NLSHHR----QGLLAIFKSGGIPALVKLLSSPVEAVLFYAITT 117
NL+H R QG+L+++ G +VKLL+S V+ LF ++T
Sbjct: 1014 NLTHVRFEEDQGILSLYDESGAVTVVKLLTS-VKVKLFVQLST 1055
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +1
Query: 19 QGLLAIFKSGGIPALVKLLSSPVEAVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVAL 198
+ ++AI + P ++ S E V ITTL + + A L G+ ++ L
Sbjct: 228 KAIIAISANSNEPGVIGPNSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVIEL 287
Query: 199 LQRNNVKFLAIVTDCLQI 252
+++NN + VT LQ+
Sbjct: 288 IRKNNSDY--DVTPVLQM 303
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 37 FKSGGIPALVKLLSSPVEAVLFYAITTLHNLLLHQDGS 150
F +GG+P+LV L + A++ ++H ++H+ S
Sbjct: 166 FLTGGLPSLVVLGFGIISAMIVNFFDSIHTPVVHRSNS 203
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 467 PLGLPRCMARACMPPASTIA 408
P G+P AR +PP S+IA
Sbjct: 120 PSGVPPAFARTLLPPVSSIA 139
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 71 YSALQLKLCSFMLLQHCITYCCIKTVQRWLFV*LEVYKKWW 193
+SA+Q+ LC F Q C++ Q LE WW
Sbjct: 57 HSAIQMTLCDFERSQILAPSECVRGSQSECVSKLESTSTWW 97
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 484 CLWTLRNLSDAAT--KVEGLEALLQSLVQVLASTDVNIVTCAAGILS 618
CLW + A K E E ++QSL V A V C GIL+
Sbjct: 432 CLWDILACKQAGEFDKSEDFEKIVQSLDTVQAIPRWASVNCLLGILA 478
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 654 RHLIALVVASQVGENSSSTGHDVDISR 574
RHL ++A Q G N S G D + R
Sbjct: 307 RHLEVQILADQYGNNISLFGRDCSVQR 333
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 649 SYCVGCCKSSWREFQQHRSRC 587
S+C C S R+FQ+HR +C
Sbjct: 216 SFCF-CYYGSERQFQRHREKC 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,360
Number of Sequences: 5004
Number of extensions: 56195
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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