Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o09
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    60   2e-10
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    29   0.42 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   0.73 
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   1.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   2.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   3.0  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   3.0  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   3.0  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   3.9  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.8  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    24   9.0  

>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 32/92 (34%), Positives = 52/92 (56%)
 Frame = +3

Query: 66  SKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISGLPAPYMDRHSKL 245
           ++ R  R+L+QI+  D     P++   Y SI APP+  P  KY D++GL A Y D  ++L
Sbjct: 26  AQPRRNRNLRQIIQNDPVQNEPSK-FSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRL 84

Query: 246 YFSNAEEFATVRNLPMDITAGYLQLRGANTIV 341
            + N E +  +R LP      YL+LR ++ ++
Sbjct: 85  RYHNKEIYGLIRELPSGADQEYLKLRSSDVVL 116


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 316 NSEEQTLSWDKMHDSICS*YLFVKEAY*LP*LNKGSNSFKK 438
           N     LSW K+ +      L+ K AY LP L   + SFKK
Sbjct: 66  NVHSNNLSWQKIQEHEVIRELYRKAAYELPGLTPYTQSFKK 106


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 132 NEAVLYYSINAPPTFKPIKKYSDISGLPAP 221
           N + L   +  P  F PI   SDI GLP P
Sbjct: 163 NGSELNVGVLGPSLFNPIGNLSDIPGLPQP 192


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 15  EKYYCFKRENKFIVKSGSKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKY 194
           +K + FK+  K +VK   +  + + + + + +  + P PN +  + S   P    P    
Sbjct: 157 DKTHSFKKFYKSLVKEDEENGIEKKINEAMNSSASQPLPN-STNFASTTFPSV--PFHPL 213

Query: 195 SDISGLPAPYMDRHSKL 245
              SGL   Y+DR+S L
Sbjct: 214 PVDSGL-QKYIDRNSNL 229


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 186 KKYSDISGLPAPYMDRHSKLYFSNAEEFATVRN 284
           K Y D  G P P  D H++L   +   F+ + N
Sbjct: 749 KAYFDSEGKPHPITDSHNRLLVPSTRTFSQLLN 781


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 EAVLYYSINAPPTFKPIKKYSDISGL 212
           E V + SIN  P+FK + K S IS L
Sbjct: 283 ETVGWVSINGIPSFKSLVKLSGISSL 308


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 145 KTASFGHGNARSAVKICFK-DLHIRFLDPLFTMNLFSLLKQ*YF 17
           KT +  HGN    V +C K    IRFLDPL T+    +L   Y+
Sbjct: 265 KTVAKAHGNIAQLV-VCTKVGPTIRFLDPL-TLQTCDMLPSIYW 306


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 314 TTQRSKHYRGIRCMILYAVNTYLLKKHIDYH 406
           T + S H + I C+ + + NT LL   +D H
Sbjct: 243 TKKLSNHQKSITCLAMNSENTRLLSGGLDGH 273


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 208 DYQHHIWIDTQNFISLMLKSLQQS 279
           D    IW+ T++ +S MLK LQ S
Sbjct: 214 DETEPIWVSTESQLSDMLKELQNS 237


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 IEHYHGQMKQFYIIQ*MLRQHSSLLKNIQTYQDYQHHIW 228
           +E Y       Y++   L  + S++  IQT+   +HH++
Sbjct: 314 LEEYFASKLPLYVVIGQLSLYGSIISIIQTFIFDRHHLY 352


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 198 DISGLPAPYMDRHSKLY 248
           DIS  P  YMD+H+K+Y
Sbjct: 234 DISYDPFYYMDKHNKVY 250


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 150 YSINAPPTFKPIKKYSD 200
           Y IN PP  +P++ Y+D
Sbjct: 83  YPINDPPEGRPVRVYAD 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,529
Number of Sequences: 5004
Number of extensions: 36293
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)