Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o07
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    29   0.89 
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   1.6  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    28   1.6  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.7  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   3.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.3  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   8.3  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   8.3  

>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 663 NHTLFTHISNKMVSNINMLSARMIASTLCKLHSTLVV 553
           +HT+F  ISN +V NI  LS  + AS     +S  ++
Sbjct: 212 SHTIFFSISNAVVKNIKQLSKNIDASFTSIFYSVFML 248


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 1   DKNILHTAKRWNEALNECENNVCLLKKSLYGLRQSGLQWHKKLVGRLKNI 150
           DK   ++   W ++++E   ++   +KS+   R+S  +W K    RL+N+
Sbjct: 183 DKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDEWRKSTDERLENL 232


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 277 VKRQLSNAFEMKDMGKISTCLGIEFSRDKEHRVYLKQAGA 396
           +K+Q+S+  E + MG  +   G ++ RDK  +  L +A A
Sbjct: 280 LKKQISDLQEWRQMGLTTLEQGHKYERDKTQKFLLSKASA 319


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 260 SSLVARIMSST*IAINIIFSSLCATNTQGSCGNASKPIFFNLPT 129
           SS ++ ++  T +   I+F SLC T +  S  ++   I F  P+
Sbjct: 58  SSAISTLLKQTPLPTRILFLSLCLTPSSASARSSDGIILFPHPS 101


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 583 SRSYHSRTKHIDVRHHFVRDMCEQSVIDLKYLSTDK 690
           S +YH RT+  D   HF+ DM +Q     + L  DK
Sbjct: 150 STTYHVRTRLKDSVGHFLADMKQQIPFLKRILDMDK 185


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 127 LVGRLKNIGFEALPQEPCVF-VAQRDEKMMLIAIYVDDIILATNDEVWLHDVKRQLSNAF 303
           +V  L+ +G  +    P  F ++  + ++  +++ VD+I+    + +   DV    +N F
Sbjct: 8   VVNHLEKLGPASFCDTPYSFSLSDSNAELGALSLKVDEILKTNYNLINPEDVTDSDNNEF 67

Query: 304 EMKDMGKISTC 336
            +KD+  +  C
Sbjct: 68  ALKDLTWLQNC 78


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 160 LQNQYSSTFLLTFYATVILIDANHTKTSLTNTHYSHTHSMLRSSV 26
           L  +Y ++F+LT YA +  I  N+         +S  HS+  SS+
Sbjct: 431 LATRYRASFMLTDYAGLKTIAYNYQNDPKATLGFSKKHSVDLSSL 475


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 98 RKPYKDFFNKHTLFSHSFN 42
          R+ YKDF   H + SH +N
Sbjct: 42 RRRYKDFEMLHNILSHDYN 60


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 410  KHENSVPLHYRAQKPSTWRFLKQ 478
            K+   +PL+ R +KP  WR  KQ
Sbjct: 1141 KNLKVLPLYNRFEKPDEWRISKQ 1163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,092
Number of Sequences: 5004
Number of extensions: 64057
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)